Publications list
Benchmark models for diffuse pollution : the challenges. Archiv fur Hydrobiologie, Large Rivers Suppl.17. 161:49-73.
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2006.
Recent trends in water quality in an agricultural catchment in Eastern Scotland: elucidating the roles of hydrology and land use. Environmental Science: Processes and Impacts. 16:1659-1675.
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2014.
Factors influencing the residence time of catchment waters: A virtual experiment approach. Water Resources Research. 43(6):W06408.
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2007.
The role of groundwater characteristics in catchment recovery from nitrate pollution. Hydrology Research. 43:560-575.
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2012.
Conceptualising in catchment modelling: simply learning? Hydrological Processes. 22(13):2389-2393.
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2008.
Relationships between climate, water resources, land use and diffuse pollution and the significance of uncertainty in climate change. Journal of Hydrology. 434:19-35.
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2012.
The dynamics of root meristem distribution in the soil. Plant Cell and Environment. 33:358-369.
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2010.
Root growth models: Towards a new generation of continuous approaches. Journal of Experimental Botany. 61:2131-2143.
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2010.
Mechanisms of early microbial establishment on growing root surfaces. Vadose Zone Journal. 15
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2016.
An algorithm for the simulation of the growth of root systems on deformable domains. Journal of Theoretical Biology. 310:164-174.
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2012.
Micromechanics of root development in soil. Current Opinion in Genetics and Development. 51:18-25.
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2018.
Coordination of plant cell division and expansion in a simple morphogenetic system. Proceedings of the National Academy of Sciences, USA. 107:2711-2716.
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2010.
Accelerating root system phenotyping of seedlings through a computer-assisted processing pipeline. Plant Methods. 13:ArticleNo.57.
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2017.
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2010.
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2015.
Environmental modifiers of the relationship between water table depth and Ellenberg’s indicator of soil moisture. Ecological Indicators. 132:ArticleNo.108320.
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2021.
Regular crabmeat consumers do not show increased urinary cadmium or beta-2-microglobulin levels compared to non-crabmeat consumers. Journal of Trace Elements in Medicine and Biology. 52:22-28.
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2019.
Regular crabmeat consumers do not show increased urinary cadmium or beta-2-microglobulin levels compared to non-crabmeat consumers. Journal of Trace Elements in Medicine and Biology. 52:22-28.
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2019.
A simple and rapid method for labelling earthworms with 15N and 13C. Soil Biology & Biochemistry. 37:989-993. Abstract
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2005.
Implications of carbon forestry for local livelihoods and leakage. Annals of Forest Science. 71:227-237.
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2013.
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2011.
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2012.
The corn price surge: impacts in rural Mexico. World Development. 39:1878-1887.
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2011.
Allelic diversity of S-RNase alleles in diploid potato species. Theoretical and Applied Genetics. 129:1985-2001.
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2016.
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2007.
A cup of tea? - The role of social dimensions in land managers' adaptations to policy change Land Use Policy. 113:Paper105926.
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2021.
Connecting young people with greenspaces: the case for participatory video. People and Nature. Published online..
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2021.
A cup of tea? - The role of social dimensions in land managers' adaptations to policy change Land Use Policy. 113:Paper105926.
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2021.
A cup of tea? - The role of social dimensions in land managers' adaptations to policy change Land Use Policy. 113:Paper105926.
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2021.
The challenges of participatory and systemic environmental management: from aspiration to implementation. Journal of Environmental Planning and Management. 60:1683-1701.
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2017.
Does nature conservation enhance ecosystem services delivery? Ecosystem Services. 17:152-162.
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2016.
Immunological differences between susceptible and resistant sheep during the preclinical phase of scrapie infection. Journal of General Virology. 88:1384-1391. Abstract
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2007.
The status of Capercaillie, Tetrao urogallus, in Scotland in the winter 2003-04. Bird Study. 54:145-153.
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2007.
CD21 B cell populations are altered following subcutaneous scrapie inoculation in sheep. Veterinary Immunology and Immunopathology. 131:105-109.
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2009.
Shifts in the metabolic function of benthic estuarine microbial community following a single pulse exposure to silver nanoparticles. Environmental Pollution. 201:91-99.
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2015.
Maternal undernutrition and the ovine acute phase response to vaccination. BMC Veterinary Research, 4:1. 4(1)
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2008.
Sediment Influence on congener-specific PCB bioaccumulation by Mytilus Edulis: a case study from an intertidal hot spot, Clyde Estuary, UK. Journal of Environmental Monitoring. 8(9):887-896.
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2006.
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2008.
e-Social science and evidence-based policy assessment: challenges and solutions. Social Science Computer Review. 27(4):553-568.
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2009.
Elemental status (Cu, Mo, Co, B, S, and Zn) of Scottish agricultural soils compared with a soil-based risk assessment. Soil Use and Management. 28:167-176.
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2012.
Tracheids in an early vascular plant: a tale of two branches. Botanical Journal of the Linnean Society. 150:115-130. Abstract
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2006.
Lessons learnt from the deployment of a semantic virtual research environment. Journal of Web Semantics. 27-28:70-77.
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2014.
Regional trends in Scottish advisory soil acidity and phosphorus results: significance of management history, land use and soil attributes. Soil Use and Management. 32:44-53.
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2016.
Could land-based early photosynthesizing ecosystems have bioengineered the planet in mid-Palaeozoic times? Palaeontology. 58:803-837.
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2015.
Source strengths, transport pathways and delivery mechanisms of nutrients, suspended solids and coliforms within a small agricultural headwater catchment. Science of the Total Environment. 434:123-129.
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2012.
A spectrophotometric assay for robust viability testing of seed batches using 2, 3, 5-tryphenyl tetrazolium chloride: using Hordeum vulgare L. as a model. Frontiers in Plant Science. 8:ArticleNo.e747.
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2017.
The influence of weathering and organic matter on heavy metals lability in silicatic, Alpine soils. The Science of the Total Environment.. 408(4):931-946.
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2010.
Effect of north and south exposure on organic matter in high Alpine soils. Geoderma. 149(1-2):124-136.
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2009.
Patterns of attention to renewable energy in the British farming press from 1980 to 2013. Renewable and Sustainable Energy Reviews. 54:959-973.
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2016.
BAX INHIBITOR-1 is required for full susceptibility of barley to powdery mildew. Molecular Plant-Microbe Interactions. 23:1217-1227.
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2010.
Review: A mechanistic framework to improve understanding and applications of push-pull systems in pest management. Journal of Applied Ecology. 53:202-212.
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2016.
Review: A mechanistic framework to improve understanding and applications of push-pull systems in pest management. Journal of Applied Ecology. 53:202-212.
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2015.
Priorities for research in soil ecology. Pedobiologia. 63:1-7.
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2017.
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2007.
Closure threat to key museum research facility. Nature. 465:-1005.
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2010.
Variation in hydrogen isotope composition among salt marsh plant organic compounds highlights biochemical mechanisms controlling biosynthetic fractionation. Journal of Geophysical Research - Biogeosciences. 123:2645-2660.
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2018.
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2016.
Understanding H-2/H-1 systematics of leaf wax n-alkanes in coastal plants at Stiffkey saltmarsh, Norfolk, UK. Geochimica et Cosmochimica Acta.. 128:13-28.
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2014.
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2016.
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2010.
Modelling habitat preferences of feral pigs for rooting in lowland rainforest. Biological Invasions. 15:1523-1535.
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2013.
Environmental risk factors in the incidence of Johne's disease.l. Critical Reviews in Microbiology..
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2014.
Burkholderia spp. are the most competitive symbionts of Mimosa, particularly under N-limited conditions. Environmental Microbiology. 11(4):762-778.
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2009.
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2012.
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2014.
Translocation of 15N indicates nitrogen recycling in the mat-forming lichen Cladonia portentosa. New Phytologist. 168:423-434. Abstract
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2005.
A new approach to modelling the relationship between annual population abundance indices and weather data. Journal of Agricultural Biological and Environmental Statistics. 22:427-445.
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2017.
Working with stakeholders to reduce conflict - modelling the impact of varying hen harrier Circus cyaneus densities on red grouse Lagopus lagopus populations. Journal of Applied Ecology. 51:1236-1245.
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2014.
Power calculations for monitoring studies: a case study with alternative models for random variation. Environmetrics. 22:618-625.
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2011.
Temporal differentiation of resource capture and biomass accumulation as a driver of yield increase in intercropping. Frontiers in Plant Science. 12:ArticleNo.668803.
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2021.
Guest editorial special issue on payments for forest watershed services. Water Resources and Economics. 28:ArticleNo.100153..
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2019.
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2012.
Effects of contrasting precipitation patterns on the trajectory of actively growing and inactive microbial communities after rewetting. Soil Biology and Biochemistry. 134:172-174.
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2019.
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2017.
Habituation and extinction in an approach/avoidance test: an example with sheep. Applied Animal Behaviour Science. 99:132-144.
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2006.
Evolution of phosphorus speciation with depth in an agricultural soil profile. Geoderma. 280:29-37.
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2016.
Quantifying fish and mobile invertebrate production from a threatened nursery habitat. Journal of Applied Ecology. 53:596-606.
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2016.
The nitrification inhibitor dicyandiamide increases mineralisation-immobilisation turnover in slurry amended grassland soil. Journal of Agricultural Science. 152:S137-S149.
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2014.
Distinct roles for strigolactones in cyst nematode parasitism of Arabidopsis roots. European Journal of Plant Pathology. 154:129-140.
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2019.
Barley transcriptome analyses upon interaction with different aphid species identify thionins contributing to resistance. Plant Cell and Environment. 40:2628-2643.
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2017.
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2016.
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2018.
Identification and characterization of parasitism genes from the pinewood nematode Bursaphelenchus xylophilus reveals a multilayered detoxification strategy. Molecular Plant Pathology. 17:286-295.
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2016.
Ex-ante analysis of the regional impacts of the Common Agricultural Policy: a rural-urban recursive dynamic CGE model approach. European Planning Studies. Published online..
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2013.
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2018.
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2018.
The cascading impacts of livestock grazing in upland ecosystems: a 10 year experiment. Ecosphere. 6:ArticleNo.42..
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2015.
The 'Goldilocks Zone' of predation: the level of fox control needed to select predator resistance in a reintroduced mammal in Australia. Biodiversity and Conservation. Published online..
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2021.
Does grazing on biosolids-treated pasture pose a pathophysiological risk associated with increased exposure to endocrine disrupting compounds? Journal of Animal Science. 92:3185-3198.
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2014.
Biodiversity offsetting: what are the challenges, opportunities and research priorities for animal conservation? Animal Conservation. 18:1-3.
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2015.
Low intensity, mixed livestock grazing improves the breeding abundance of a common insectivorous passerine. Biology Letters. 2(4):636-638.
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2006.
Funding nature conservation: who pays? Animal Conservation. 15:215-216.
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2012.
Slopes of avian species - area relationships, human population density, and environmental factors. Avian Conservation and Ecology, Ecologie et Conservation des Oiseaux 2(2): 7..
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2007.
To graze or not to graze? Sheep, voles, forestry and nature conservation in the British uplands Journal of Applied Ecology. 43(3):499-505.
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2006.
Prevalence of Escherichia coli O157: H7 and serogroups O26, O103, O111 and O145 in sheep presented for slaughter in Scotland. Journal of Medical Microbiology. 60:653-660.
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2011.
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2006.
Overriding importance of water table in the greenhouse gas balance of managed peatlands. Nature. Published online.
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2021.
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2020.
Linking monitoring and modelling: can long-term datasets be used more effectively as a basis for large-scale prediction? Biogeochemistry. 101(1-3):211-227.
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2010.
XANES speciation of P in environmental samples: an assessment of filter media for on-site wastewater treatment. Environmental Science and Technology. 42(17):6515-6521.
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2009.
Ecosystem service assessment of selected wetlands of Kolkata and the Indian Gangetic Delta: multi-beneficial systems under differentiated management stress. Wetlands Ecology and Management. Published online..
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2019.
The transcriptome of Nacobbus aberrans reveals insights into the evolution of sedentary endoparasitism in plant-parasitic nematodes. Genome Biology and Evolution. 6:2181-2194.
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2014.
Plant-parasitic nematode feeding tubes and plugs: new perspectives on function. Nematology. 17:1-9.
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2015.
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2016.
Plant-parasitic nematode feeding tubes and plugs: new perspectives on function. Nematology. 17:1-9.
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2009.
The feeding tube of cyst nematodes: characterisation of protein exclusion. PLoS ONE. 9:e87289.
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2014.
Functional C-TERMINALLY ENCODED PEPTIDE (CEP) plant hormone domains evolved de novo in the plant parasite Rotylenchulus reniformis. Molecular Plant Pathology. 17:1265-1275.
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2016.
Sex: not all that it’s cracked up to be? PLoS Genetics. 14:ArticleNo.e1007160..
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2018.
Crop modelling for integrated assessment of risk to food production from climate change. Environmental Modelling and Software. 72:287-303.
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2015.
Uncovering mechanisms behind mosquito seasonality by integrating mathematical models and daily empirical population data: Culex pipiens in the UK. Parasites and Vectors. 12:ArticleNo.74.
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2019.
Exploring the longitudinal dynamics of herd BVD antibody test results using model-based clustering. Scientific Reports. 9:ArticleNo.11353.
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2019.
Do we care about sustainability? An analysis of time sensitivity of social preferences under environmental time-persistent effects Journal of Environmental Management. 117:356-364.
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2016.
Stated preferences for conservation policies under uncertainty: insights on individuals’ risk attitudes in the environmental domain. Environmental and Resource Economics. Published online..
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2018.
Environmental attitudes and place identity as determinants of preferences for ecosystem services. Ecological Economics. 174:ArticleNo.106600.
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2020.
Interring species interaction networks from species abundance data: A comparative evaluation of various statistical and machine learning methods. Ecological Informatics. 5:451-464.
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2010.
Inferring species interaction networks from species abundance data: A comparative evaluation of various statistical and machine learning methods. Ecological Informatics. 5(6):451-464.
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2010.
Microbial mechanisms of the contrast residue decomposition and priming effect in soils with different organic and chemical fertilization histories. Soil Biology and Biochemistry. 135:213-221.
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2019.
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2005.
Growth rate affects the responses of the green alga Tetraselmis suecica to external perturbations. Plant Cell and Environment. 37:512-519.
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2014.
Effects of increased day and night temperature with supplemental infrared heating on winter wheat growth in North China. European Journal of Agronomy. 64:67-77.
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2015.
Special section guest editorial: Recent advances in earth observation technologies for agrometeorology and agroclimatology. Journal of Applied Remote Sensing. 12:ArticleNo.022201.
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2018.
The oil-contaminated soil diazotroph Azoarcus olearius DQS-4T if genetically and phenotypically similar to the model grass endophyte Azoarcus sp. BH72. Environmental Microbiology Reports. 9:223-238.
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2017.
The oil-contaminated soil diazotroph Azoarcus olearius DQS-4T if genetically and phenotypically similar to the model grass endophyte Azoarcus sp. BH72. Environmental Microbiology Reports. 9:223-238.
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2017.
AFLP analysis of the genetic diversity of Meloidogyne chitwoodi and M. fallax, major agricultural pests. Comptes Rendus Biologies. 328:455-462. Abstract
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2005.
The implications of integrated assessment and modelling studies for the future remediation of chromite ore processing residue disposal sites. The Science of the Total Environment. 360(1-3):90-97.
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2006.
The tropical peatland plantation-carbon assessment tool: estimating CO2 emissions from tropical peat soils under plantations. Mitigation and Adaptation Strategies for Global Change. 19:863-885.
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2014.
Comparison of methods for quantifying soil carbon in tropical peats. Geoderma. 214:177-183.
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2014.
Influences upon the lead isotopic composition of organic and mineral horizons in soil profiles from the National Soil Inventory of Scotland (2007-09). Science of the Total Environment. 544:730-743.
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2015.
Assessing existing peatland models for their applicability for modelling greenhouse gas emissions from tropical peat soils. Current Opinion in Environmental Sustainability. 3:339-349.
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2011.
A comparison of the isotopic composition of lead in rainwater, surface vegetation and tree bark at the long-term monitoring site, Glensaugh, Scotland in 2007. The Science of the Total Environment. 408(17):3704-3710.
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2010.
Stable isotope analysis of white paints and likelihood ratios. Science and Justice. 49:114-119. Abstract
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2009.
Forensic analysis of wooden safety matches - a case study. Science and Justice. 47:88-98. Abstract
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2007.
Influences upon the lead isotopic composition of organic and mineral horizons in soil profiles from the National Soil Inventory of Scotland (2007-09). Science of the Total Environment. 544:730-743.
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2016.
An exploration of the longer-term impacts of community participation in rural health services design. Social Science and Medicine. 141:64-71.
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2015.
Effect of drying-rewetting durations in combination with synthetic fertilizers and crop residues on soil fertility and maize production. Pakistan Journal of Botany. 52:2051-2058.
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2020.
Genetic characterization of a reciprocal translocation present in a widely grown barley variety. Molecular Breeding. 30:1109-1119.
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2012.
A comparison of enhancement techniques for footwear impressions on dark and patterned fabrics. Journal of Forensic Sciences. 58:1472-1485.
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2013.
Chemical enhancement of soil based footwear impressions on fabric. Forensic Science International. 219:12-28.
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2012.
Comparison of different methods of obtaining a resilient organic matter fraction in Alpine soils. Geoderma. 145(3-4):355-369.
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2008.
Transformation in a changing climate: a research agenda. Climate and Development. Published online..
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2017.
Knowledge Exchange: a review and research agenda for environmental management. Environmental Conservation. 40:19-36.
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2013.
Evaluating knowledge exchange in interdisciplinary and multi-stakeholder research. Global Environmental Change - Human and Policy Dimensions. 25:204-220.
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2014.
Transformation in a changing climate: a research agenda. Climate and Development. Published online..
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2017.
Integrated genetic and computation methods for in planta cytometry. Nature Methods. 9:483-485.
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2012.
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2006.
Three-dimensional microorganisation of the soil-root-microbe system. Microbial Ecology. 52:151-158. Abstract
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2006.
Effectiveness indicators for forest owner's association in Portugal. Silva Lusitana. 20:55-70.
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2012.
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2014.
Climate change mitigation options in the rural land use sector: Stakeholders' perspectives on barriers, enablers and the role of policy in North East Scotland. Environmental Science and Policy. 44:26-38.
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2014.
Estimating the contribution of rural land uses to greenhouse gas emissions: A case study for North East Scotland. Environmental Science and Policy. 25:36-49.
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2013.
Selecting land-based mitigation practices to reduce GHG emissions from the rural land use sector: a case study of North East Scotland. Journal of Environmental Management. 120:93-104.
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2013.
E unum pluribus: multiple proteins from a self-processing polyprotein. Trends in Biotechnology. 24:68-75. Abstract
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2006.
Chemical characterization of microbial-dominated soil organic matter in the Garwood Valley, Antarctica. Geochimica et Cosmochimica Acta. 74:6485-6498.
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2010.
Permeable reactive interceptors - blocking diffuse nutrient and greenhouse gases losses in key areas of the farming landscape. Journal of Agricultural Science. 152:S71-S81.
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2014.
Reproductive performance of asexual clones of the peach-potato aphid (Myzus persicae, Homoptera: Aphididae) colonising Scotland in relation to host plant and field ecology. Bulletin of Entomological Research. 100:451-460.
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2010.
The attack of the clones: tracking the movement of insecticide-resistant peach-potato aphids Myzus persicae (Hemiptera: Aphididae). Bulletin of Entomological Research. 95:483-494. Abstract
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2005.
Stopped in its tracks: how -cyhalothrin can break the aphid transmission of a potato potyvirus. Pest Management Science. 71:1611-1616.
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2015.
Micro-evolutionary change in relation to insecticide resistance in the peach-potato aphid, Myzus persicae. Ecological Entomology. 35:131-146.
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2010.
Differential expression of microRNAs and potential targets under drought stress in barley. Plant Cell and Environment. 40:11-24.
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2017.
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2012.
Application of long-chain alcohols as diet-composition markers in sheep fed on grass-white clover and heather-gorse plant species. Grass and Forage Science. 70:30-43.
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2015.
Topographic impacts on wheat yields under climate change: two contrasted case studies in Europe. Theoretical and Applied Climatology. Published online.
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2009.
Pervasive within-host recombination and epistasis as major determinants of the molecular evolution of the foot-and-mouth disease virus capsid. PLoS Pathogens. 16:ArticleNo.e1008235.
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2020.
Potential carbon loss from Scottish peatlands under climate change. Regional Environmental Change. 19:2101-2111.
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2019.
Role of the methionine cycle in the temperature-sensitive responses of potato plants to potato virus Y. Molecular Plant Pathology. 22:77-91.
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2021.
Cereal breeding takes a walk on the wild side. Trends in Genetics. 24:24-32. Abstract
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2008.
Meeting Report: The Aaronsohn-ITMI International Conference. Israel Journal of Plant Sciences. 55:315-319.
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2007.
Rigorous 3D change determination in Antarctic Peninsula glaciers from stereo WorldView-2 and archival aerial imagery. Remote Sensing of Environment. 205:18-31.
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2018.
The role of nitrogen deposition in widespread plant community change across semi-natural habitats. Ecosystems. 17:864-877.
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2014.
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2014.
Geomorphic response of a mountain gravel-bed river to an extreme flood in Aberdeenshire, Scotland. Scottish Journal of Geology. Published online..
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2020.
Blood-brain barrier permeability and neuroprotective potential of blackberry-digested polyphenols. European Journal of Nutrition. 58:113-130.
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2019.
Polyphenols journey through blood-brain barrier towards neuronal protection. Scientific Reports. 7:ArticleNo.11456.
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2017.
Regime shifts in coupled socio-environmental systems: review of modelling challenges and approaches. Environmental Modelling and Software. 75:333-347.
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2016.
Spatial agent-based models for socio-ecological systems: challenges and prospects. Environmental Modelling and Software. 45:1-7.
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2013.
Long-term exposure to chemicals in sewage sludge fertilizer alters liver lipid content in females and cancer marker expression in males. Environment International. 124:98-108.
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2019.
Phytoplankton in a changing world: Cell size and elemental stoichiometry. Journal of Plankton Research. 32:119-137.
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2010.
Irradiance and the elemental stoichiometry of marine phytoplankton. Limnology and Oceanography. 51:2690-2701. Abstract
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2006.
Response of lightning NOx emissions and ozone production to climate change: Insights from the Atmospheric Chemistry and Climate Model Intercomparison Project. Geophysical Research Letters. 43:5492-5500.
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2016.
Ethnicity and evolution of the biodemographic structure of Arbereshe and Italian populations of the Pollino Area, Southern Italy (1820-1984). American Anthropologist. 109(4):735-746.
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2007.
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2006.
On the multifunctionality of hunting - an institutional analysis of eight cases from Europe and Africa. Journal of Environmental Planning and Management. 56:531-552.
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2013.
On the interplay of actors in the co-management of natural resources - a dynamic perspective. Journal of Environmental Management. 64:158-168.
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2014.
Universal criteria for species conservation priorities? Findings from a survey of public views across Europe Biological Conservation. 144:998-1007.
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2011.
Understanding mental constructs of biodiversity - implications for biodiversity management and conservation. Biological Conservation. 136(2):271-282.
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2007.
On the role of ideas of human nature in shaping attitudes towards environmental governance. Human Ecology. 38(1):123.-135.
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2010.
Coproduction of ecosystem services as human-nature interactions - an analytical framework. Land Use Policy. 52:41-50.
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2016.
(De-) legitimising hunting - discourses over the morality of hunting in Europe and Eastern Africa. Land Use Policy. 32:261-270.
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2013.
Trophy hunters' willingness to pay for wildlife conservation and community benefits. Conservation Biology. 29:1111-1121.
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2015.
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2014.
Social representations of governance for change towards sustainability: perspectives of sustainability advocates. Environmental Politics. 27:621-643.
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2018.
Invasive plant suppresses charismatic seabird - the construction of attitudes towards biodiversity management options. Biological Conservation. 135(2):256-267.
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2007.
Energy use, climate change and folk psychology: Does sustainability have a chance? Results from a qualitative study in five European countries Global Environmental Change. 21:1025-1034.
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2011.
Explanatory factors for household involvement in illegal bushmeat hunting around Serengeti, Tanzania. Journal for Nature Conservation. 22:491-496.
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2014.
A question of capacities? Community resilience and empowerment between assets, abilities and relationships Journal of Rural Studies. 54:187-197.
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2017.
Sustainable governance of natural resources and institutional change - an analytical framework. Public Administration and Development. 27(2):123-137.
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2007.
Mental representations of animal and plant species in their social contexts: Results from a survey across Europe. Journal of Environmental Psychology. 31:118-128.
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2011.
Analysing decision behaviour in stated preference surveys: a consumer psychological approach. Ecological Economics. 61(2-3):303-314.
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2007.
Community-led initiatives' everyday politics for sustainability - conflicting rationalities and aspirations for change. Environment and Planning A. 49:1986-2006.
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2017.
Exploring the potential of citizen social science for environmental and sustainability research: experiences of and with community-based researchers. Citizen Science: Theory and Practice. 6:1-12.
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2021.