Publications list
Generating genomic tools for blueberry improvement. International Journal of Fruit Science. 12:276-287.
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2012.
Vegetation type affects the relationship between soil carbon to nitrogen ratio and nitrogen leaching. Water Air and Soil Pollution. 177(1-4):335-347.
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2006.
Metrics for evaluating the ecological benefits of decreased nitrogen deposition. Biological Conservation. 212:454-463.
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2017.
Repeated application of diluted olive mill wastewater induces changes in the structure of the soil microbial community. European Journal of Soil Biology. 46(1):34-40.
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2010.
Quantifying species composition in root mixtures using two methods: near-infrared reflectance spectroscopy and plant wax markers. New Phytologist. 170(3):631-638.
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2006.
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2016.
Progress in model-to-model analysis. Journal of Artificial Societies and Social Simulation. 11(2):8.
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2008.
A classification and regression tree model of controls on dissolved inorganic nitrogen leaching from European forests. Environmental Pollution. 156(2):544-552.
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2009.
Putative household outbreaks of campylobacteriosis typically comprise single MLST genotypes. Epidemiology and Infection. 138:1744-1747.
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2010.
Recent history of artificial outcrossing facilitates whole-genome association mapping in elite inbred crop varieties. Proceedings of the National Academy of Sciences, USA. 103:18656-18661. Abstract
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2006.
Single feature polymorphism discovery in the barley transcriptome. Genome Biology. 6:-R54. Abstract
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2005.
Barley necrotic locus nec1 encodes the cyclic nucleotide-gated ion channel 4 homologous to the Arabidopsis HLM1. Molecular Genetics and Genomics. 275:159-168. Abstract
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2006.
Genome wide SNP discovery and linkage analysis in barley based on genes responsive to abiotic stress. Molecular Genetics and Genomics. 274:515-527springerlink.com/content/7625g78880706u6m/fulltext.pdf. Abstract
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2005.
RNAi and functional genomics in plant parasitic nematodes. Annual Review of Phytopathology. 47:207-232.
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2009.
Flagella interact with ionic plant lipids to mediate adherence of pathogenic Escherichia coli to fresh produce plants. Environmental Microbiology. 16:2181-2195.
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2014.
Bacterial flagella: twist and stick, or dodge across the Kingdoms. PLoS Pathogens.. 11:e1004483.
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2015.
Escherichia coli common pilus (ECP) targets arabinosyl residues in plant cell walls to mediate adhesion to fresh produce plants. Journal of Biological Chemistry. 289:34349-34365.
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2014.
How important is plot relocation accuracy when interpreting re-visitation studies of vegetation change? Plant Ecology and Diversity. 3(1):1-8.
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2010.
Antiproliferative activity is predominantly associated with ellagitannins in raspberry extracts. Phytochemistry. 68:218-228. Abstract
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2007.
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2016.
Discerning intra-tuber differences in textural properties in cooked Solanum tuberosum group Tuberosum and group Phureja tubers. Journal of the Science of Food and Agriculture. 90:1527-1532.
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2010.
Potato tuber pectin structure is influenced by pectin methyl esterase activity and impacts on cooked potato texture. Journal of Experimental Botany. 62:371-381.
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2011.
Biotic homogenization of upland vegetation: patterns and drivers at multiple spatial scales over five decades. Journal of Vegetation Science. 23:755-770.
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2012.
Pectin engineering to modify product quality in potato. Plant Biotechnology Journal. 9:848-856.
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2011.
Archaeorhizomycetes: unearthing an ancient class of ubiquitous soil fungi. Science. 333:876-879.
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2011.
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2016.
Effect of clay content and wetting and drying on radiocaesium behaviour in a peat and peaty podzol. The Science of the Total Environment. 368(2-3):795-803.
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2006.
A high intake of industrial or ruminant trans fatty acids does not affect the plasma proteome in healthy men. Proteomics. 11:3928-3934.
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2011.
Towards automatic calibration of neighbourhood influence in cellular automata land-use models. Computers Environment and Urban Systems. 79:ArticleNo.101416.
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2020.
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2011.
The intragenic approach as a new extension to traditional plant breeding. Trends in Plant Science. 12:397-403. Abstract
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2007.
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2011.
The Soil & Tillage Research Virtual Special Issue related to the 21th International ISTRO Conference. Soil and Tillage Research. 199:ArticleNo.104576.
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2020.
Green space and stress: evidence from cortisol measures in deprived urban communities. International Journal of Environmental Research and Public Health.
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2013.
Alperujo extract, hydroxytyrosol, and 3,4-dihydroxyphenylglycol are bioavailable and have antioxidant properties in vitamin e-deficient ratsua proteomics and network analysis approach. Molecular Nutrition and Food Research. 56:1131-1147.
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2012.
Implications of crop model ensemble size and composition for estimates of adaptation effects and agreement of recommendations. Agricultural and Forest Meteorology. 264:351-362.
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2019.
Toward understanding the role of aphid effectors in plant infestation. Molecular Plant Microbe Interactions. 26:25-30.
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2013.
Mp10 and Mp42 from the aphid species Myzus persicae trigger plant defenses in Nicotiana benthamiana through different activities. Molecular Plant Microbe Interactions. 27:30-39.
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2014.
Rabbit haemorrhagic disease virus type 2 in hares in Scotland. Veterinary Record. 185:23.
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2019.
Natural capital and ecosystem services, developing an appropriate soils framework as a basis for valuation. Soil Biology and Biochemistry. 57:1023-1033.
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2013.
Root-shoot growth responses during interspecific competition quantified using allometric modelling. Annals of Botany. 106(6):921-926.
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2010.
Introduction to the special feature on mechanisms of plant competition. Functional Ecology. 27:831-832.
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2013.
Spatial distribution of fungal communities in a coastal grassland soil. Soil Biology and Biochemistry. 41(2):414-416.
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2009.
Re-description of Cryptosporidium cuniculus Inman and Takeuchi 1979 (Apicomplexa:Cryptosporidiidae): morphology, biology and phylogeny. International Journal for Parasitology. 40:1539-1548.
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2010.
Comparison of empirical methods for building agent-based models in land use science. Journal of Land Use Science. 2(1):31-55.
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2007.
Root hair mutations displace the barley rhizosphere microbiota. Frontiers in Plant Science.. 8:ArticleNo.1094.
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2017.
Preferences of sheep and goats for straw pellets treated with different food-flavouring agents. Small Ruminant Research. 63(1-2):50-57.
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2006.
Predicting a change in the order of spring phenology in temperate forests. Global Change Biology. 21:2603-2611.
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2015.
Associations between greenspace and mental health prescription rates in urban areas. Urban Forestry and Urban Greening. Published online..
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2021.
Striking a balance between in-person care and the deployment of eHealth to support the older rural population with chronic pain. International Journal of Qualitative Studies on Health and Well-Being. 10
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2015.
Prioritising invasive species control actions: evaluating effectiveness, costs, willingness to pay and social acceptance. Ecological Economics. 152:1-8.
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2018.
Phosphorus retention and remobilization in vegetated buffer strips: a review. Journal of Environmental Quality. 41:389-399.
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2012.
Exploring relationships between phenological and weather data using smoothing. International Journal of Biometeorology. 52:463-470. Abstract
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2008.
Stakeholder perceptions of public good provision from agriculture and implications for governance mechanism design. Journal of Environmental Planning and Management. 64:289-307.
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2021.
Carbon acquisition by diatoms. Photosynthesis Research. 93:79-88. Abstract
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2007.
Microbial biomass phosphorus contributions to phosphorus solubility in riparian vegetated buffer strip soils. Biology and Fertility of Soils. 49:1237-1241.
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2013.
Directed terminal restriction analysis tool (DRAT): an aid to enzyme selection for directed terminal restriction fragment length polymorphisms. Methods in Ecology and Evolution. 3:24-28.
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2012.
C3 and C4 pathways of photosynthetic carbon assimilation in marine diatoms are under genetic, not environmental, control. Plant Physiology. 145:230-235. Abstract
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2007.
Phosphorus leaching from riparian soils with differing management histories under three grass species. Journal of Environmental Quality. 49:74-84.
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2020.
Estimating the motion of plant root cells from in vivo confocal laser scanning microscopy images. Machine Vision and Applications. 21:921-939.
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2010.
Farm household interactions with local economies: A comparison of two EU case study areas. Land Use Policy. 31:156-165.
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2013.
Fuel poverty in the UK: Is there a difference between rural and urban areas? Energy Policy. 87:216-223.
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2015.
Comparison of regression methods for phenology. International Journal of Biometeorology. 56:707-717.
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2012.
Calibration of quantitative PCR assays. Journal of Agricultural Biological and Environmental Statistics. 12:364-378. Abstract
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2007.
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2016.
Climate change impacts and adaptation scope for agriculture indicated by agro-meteorological metrics. Agricultural Systems. 114:15-31.
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2013.
Evaluating uncertainty introduced to process-based simulation model estimates by alternative sources of meteorological data. Agricultural Systems. 88(2-3):451-461.
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2006.
Evaluating Regional Climate Model estimates against site-specific observed data in the UK. Climatic Change. 88(2):157-185.
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2008.
UK food and nutrition security during and after the COVID-19 pandemic. Nutrition Bulletin. 46:88-97.
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2021.
An integrated assessment approach to conduct analyses of climate change impacts on whole-farm systems. Environmental Modelling Software. 22(2):202-210.
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2006.
Downscaling regional climate model estimates of daily precipitation, temperature and solar radiation data. Climate Research. 35:181-202.
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2008.
Agro-meteorological metrics for communicating climate change impacts to land managers. Aspects of Applied Biology. 88:85-91.
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2008.
Investigating climate change impacts and adaptation options using integrated assessment methods. Aspects of Applied Biology. 93:85-91.
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2009.
Sound as a qualitative index of speckle laser to monitor biological systems. Computers and Electronics in Agriculture. 158:271-277.
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2019.
Selecting biological indicators for monitoring soils: A framework for balancing scientific and technical opinion to assist policy development. Ecological Indicators. 9(6):1212-1221.
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2009.
Towards a microbial process-based understanding of the resilience of peatland ecosystem service provisioning - a research agenda. Science of The Total Environment. 759:ArticleNo.143467.
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2020.
Integrated control of potato late blight: predicting the combined efficacy of host resistance and fungicides. Plant Pathology. 67:1784-1791.
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2018.
Distribution of calcium (Ca) and magnesium (Mg) in the leaves of Brassica rapa under varying exogenous Ca and Mg supply. Annals of Botany. 109:1081-1089.
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2012.
Genome-wide analysis of the response of Dickeya dadantii 3937 to plant antimicrobial peptides. Molecular Plant-Microbe Interactions. 25:523-533.
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2012.
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2017.
Molecular identification of two stubby root nematode species. American Journal of Potato Research. 84:161-167. Abstract
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2007.
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2006.
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2005.
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2010.
Poly(T) variation within mitochondrial protein-coding genes in Globodera (Nematoda : Heteroderidae). Journal of Molecular Evolution. 66:197-209. Abstract
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2008.
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2020.
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2019.
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2006.
Application of multiple behaviour change models to identify determinants of farmers' biosecurity attitudes and behaviour. Preventive Veterinary Medicine. 115:61-74.
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2018.
Plant mechanisms to optimise access to soil phosphorus. Crop and Pasture Science. 60:124-143.
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2009.
Genome sequence of the pea aphid Acyrthosiphon pisum. PLOS Biology. 8:-e1000313.
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2010.
Removal and attenuation of sewage effluent combined tracer signals of phosphorus, caffeine and saccharin in soil. Environmental Pollution. 223:277-285.
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2017.
Biogeochemical impacts of sewage effluents in predominantly rural river catchments are point source inputs distinct to background diffuse pollution. Journal of Environmental Management.
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2022.
Potential tracers for tracking septic tank effluent discharges in watercourses. Environmental Pollution. 228:245-255.
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2017.
The contribution of household chemicals to environmental discharges via effluents: Combining chemical and behavioural data. Journal of Environmental Management. 150:427-434.
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2015.
Competition indices for predicting the radial growth of Scots pine in spatially heterogeneous forest. Ecological Modelling. 221(13-14):1649-1654.
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2010.
Septic tank discharges as multi-pollutant hotspots in catchments. Science of the Total Environment. 542:854-863.
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2016.
Sustainable water resources through harvesting rainwater and the effectiveness of a low-cost water treatment. Journal of Environmental Management. 286:ArticleNo.112223.
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2021.
Temporal variability in domestic point source discharges and their associated impact on receiving waters. Science of the Total Environment. 571:1275-1283.
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2016.
Optimisation of competition indices using simulated annealing and artificial neural networks. Ecological Modelling. 214(2-4):375-384.
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2008.
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2021.
The potential use of natural vs commercial biosorbent material to remediate stream waters by removing heavy metal contaminants. Journal of Environmental Management. 231:275-281.
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2019.
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2022.
Methane emissions from beef and dairy cattle: quantifying the effect of physiological stage and diet characteristics. Journal of Animal Science. 91:5379-5389.
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2013.
Using imperfect data in predictive mapping of vectors: a regional example of Ixodes ricinus distribution. Parasites and Vectors. 12:ArticleNo.536.
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2019.
Principal component analysis in the spectral analysis of the dynamic laser speckle patterns. Journal of the European Optical Society - Rapid Publications. 9:ArticleNo.14009.
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2014.
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2014.
Leaf area estimation of medium size plants using optical metrology. Revista Brasileira de Engenharia Agricola e Ambiental. 17:595-601.
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2013.
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2015.
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2009.
Effects of exposure of ewes to sewage sludge-treated pasture on phthalate and alkyl phenol concentrations in their milk. The Science of the Total Environment. 383(1-3):70-80.
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2007.
Effect of duration of exposure to sewage sludge-treated pastures on liver tissue accumulation of persistent endocrine disrupting compounds (EDCs) in sheep. Science of the Total Environment. 409:3850-3856.
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2011.
Maternal and fetal tissue accumulation of selected endocrine disrupting compounds (EDC) following exposure to sewage sludge-treated pastures before or after conception. Journal of Environmental Monitoring. 12:1582-1593.
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2010.
Accumulation of endocrine disrupting compounds in sheep fetal and maternal liver tissue following exposure to pastures treated with sewage sludge. Journal of Environmental Monitoring. 11(8):1469-1476.
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2009.
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2006.
Anthropogenic pollutants - a insidious threat to animal health and productivity? Acta Veterinaria Scandinavica. 54:S2.
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2012.
Anthropogenic pollutants - a threat to ecosystem sustainability? Philosophical Transactions of the Royal Society, B. 364(1534):3391-3401.
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2009.
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2013.
Maternal and fetal tissue accumulation of selected endocrine disrupting compounds (EDC) following exposure to sewage sludge-treated pastures before or after conception. Journal of Environmental Monitoring. 12:1582-1593.
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2010.
Effects of environmental pollutants on the reproduction and welfare of ruminants. Animal. 4(7):1227-1239.
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2010.
Geographic variation in tissue accumulation of endocrine disrupting compounds (EDCs) in grazing sheep. Environmental Pollution. 159:416-422.
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2011.
Concentrations and geographic distribution of selected organic pollutants in Scottish surface soils. Environmental Pollution. 182:15-27.
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2013.
Endocrine disruptors and other food-contaminating environmental pollutants as risk factors in animal reproduction. Proceedings of International Congress on Animal Reproduction. Reproduction in Domestic Animals. 43(Suppl. 2):15-22.
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2008.
Fungal transformation of metallic lead to pyromorphite in liquid medium. Chemosphere. 113:17-21.
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2014.
Lead transformation to pyromorphite by fungi. Current Biology. 22:237-241.
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2012.
Pyromorphite formation in a fungal biofilm community growing on lead metal. Environmental Microbiology. 16:1441-1451.
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2014.
A new lead hydroxycarbonate produced during transformation of lead metal by the soil fungus Paecilomyces Javanicus. Geomicrobiology Journal. 33:250-260.
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2016.
How fen vegetation structure affects the transport of oil sands process-affected waters. Wetlands. 32:557-570.
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2012.
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2013.
Healthy and sustainable diets that meet greenhouse gas emission reduction targets and are affordable for different income groups in the UK. Public Health Nutrition. 22:1503-1517.
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2019.
Animal conservation and ecosystem services: garnering the support of mightier forces. Animal Conservation. 13(6):523-525.
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2010.
Animal conservation and ecosystem services: garnering the support of mightier forces. Animal Conservation. 13:523-525.
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2010.
Community resilience and narratives of community empowerment in Scotland. Community Development Journal. 55:218-236.
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2020.
A metabolomic approach to study major metabolite changes during acclimation to limiting CO2 in Chlamydomonas reinhardtii. Plant Physiology. 154:187-196.
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2010.
Phytophthora infestans RXLR effectors target parallel steps in an immune signal transduction pathway. Plant Physiology. 180:2227-2239.
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2019.
Characterization of Phytophthora infestans populations in northwestern Algeria during 2008-2014. Fungal Biology. 121:467-477.
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2017.
New training to meet the global phosphorus challenge. Environmental Science and Technology. 53:8479-8481.
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2019.
Beneficial microorganisms in agriculture: the future of plant growth-promoting rhizobacteria. Plant and Soil. 451:1-3.
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2020.
Impact of future climatic conditions on the potential for plant-mediated soil organic matter priming. Soil Biology and Biochemistry. 65:133-140.
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2013.
Projecting the effect of crop yield increases, dietary change and different price scenarios on land use under two different state security regimes. International Journal of Agricultural Sustainability. 19:288-304.
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2021.
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2005.
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2009.
Otolith chemistry reveals seamount fidelity in a deepwater fish. Deep-Sea Research, Part I. 121:183-189.
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2017.
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2009.
The limitations of regulatory science in the effective control of diffuse pollution. Law, Science and Policy. 3:123-156.
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2007.
Safeguarding freshwater life beyond 2020: Recommendations for the new global biodiversity framework from the European experience. Conservation Letters. Published online..
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2020.
Safeguarding freshwater life beyond 2020: Recommendations for the new global biodiversity framework from the European experience. Conservation Letters. 14:ArticleNo.e12771.
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2021.
Nitrous oxide mitigation in UK agriculture. Soil Science and Plant Nutrition.. 59:3-15.
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2013.
Improving the link between payments and the provision of ecosystem services in agri-environment schemes. Ecosystem Services. 9:44-53.
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2014.
Knowledge management for land degradation monitoring and assessment: an analysis of contemporary thinking. Land Degradation and Development. 24:307-322.
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2013.
The future of the uplands. Land Use Policy.. Suppl.1:S204-S216.
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2010.
Integrating ecosystem markets to coordinate landscapescale public benefits from nature. Published in PLOSONE on 12th Jan 2022. Citation: Reed MS, Curtis T, Gosal A, Kendall H, Andersen SP, Ziv G, et al. (2022) Integrating ecosystem markets to co-ordinate landscape-scale public benefits from nature. PLoS ONE 17(1): e0258334. https://doi.
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2022.
Anticipating and managing future trade-offs and complementarities between ecosystem services. Ecology and Society, 18, 5..
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2013.
Don't forget to look down - collaborative approaches to predator conservation. Biological Reviews. Published online..
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2017.
Don't forget to look down - collaborative approaches to predator conservation. Biological Reviews. 92:2157-2163.
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2017.
Compensating for the costs of polygyny in hen harriers. Behavioural Ecology and Sociobiology. 60(3):386-391.
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2006.
Hen harriers and red grouse: moving towards consensus? Journal of Applied Ecology. 46(5):961-963.
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2009.
Importance of indirect nitrous oxide emissions at the field, farm and catchment scale. Agriculture, Ecosystems and Environment. 133:163-169.
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2009.
Caspase-resistant VirD2 protein provides enhanced gene delivery and expression in plants. Plant Cell Reports. 26:1215-1219. Abstract
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2007.
Distinct circular single-stranded DNA viruses exist in different soil types. Applied and Environmental Microbiology. 81:3934-3945.
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2015.
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2021.
Nonsense-mediated RNA decay factor UPF1 is critical for posttranscriptional and translational gene regulation in arabidopsis. The Plant Cell. Published online..
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2020.
Efflux pump gene expression in Erwinia chrysanthemi is induced by exposure to phenolic acids. Molecular Plant-Microbe Interactions. 20:313-320. Abstract
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2007.
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2006.
Bacteriophages and the control of Erwinia carotovora subsp. carotovora. Canadian Journal of Plant Pathology. 29:121-130.
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2007.
The evolution of oligotrophy: implications for the breeding of crop plants for low input agricultural systems. Annals of Applied Biology. 146:261-280. Abstract
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2005.
Life at the boundary: photosynthesis at the soil-fluid interface. A synthesis focusing on mosses (vol 67, page 1613, 2016). Correction. Journal of Experimental Botany. 68:5247.
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2017.
The evolution of inorganic carbon concentrating mechanisms in photosynthesis. Philosophical Transactions of the Royal Society of London B - Biological Sciences. 363:2641-2650. Abstract
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2008.
Speedy small stomata? Journal of Experimental Botany. 65:1415-1424.
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2014.
Grasses. Current Biology. 20:R837-R839.
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2010.
Aquatic viruses: the emerging story. Journal of the Marine Biological Association of the United Kingdom. 86:449-451. Abstract
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2006.
Cells inside cells: symbiosis and continuing phagotrophy. Current Biology. 23:R530-R531.
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2013.
Enhanced biofuel production using optimality, pathway modification and waste minimization. Journal of Applied Phycology. 27:1-31.
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2015.
Life at the boundary: photosynthesis at the soil-fluid interface. A synthesis focusing on mosses. Journal of Experimental Botany. 67:1613-1623.
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2016.
Functional evolution of photochemical energy transformations in oxygen-producing organisms. Functional Plant Biology. 36:505-515.
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2009.
Costs of acquiring phosphorus by vascular land plants: patterns and implications for plant coexistence. New Phytologist. 217:1420-1427.
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2018.
Ecophysiology of photosynthesis in macroalgae. Photosynthesis Research. 113:105-125.
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2012.
Blue carbon: past, present and future, with emphasis on macroalgae. Biology Letters. 14:ArticleNo.20180336.
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2018.
Algae. Current Biology. 24:R590-R595.
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2014.
Sensing inorganic carbon: C02 and HCO3. Biochemical Journal. 396:e5-e7.
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2006.
Environmental controls on coccolithophore calcification. Marine Ecology Progress Series. 470:137-166.
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2012.
Q&A - John Raven. Current Biology. 15:R905-R906. Abstract
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2005.
Energizing the plasmalemma of marine photosynthetic organisms: the role of primary active transport. Journal of the Marine Biological Association of the United Kingdom. 100:333-346.
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2020.
The possible roles of algae in restricting the increase in atmospheric CO2 and global temperature. European Journal of Phycology. 52:506-522.
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2017.
Determinants, and implications, of the shape and size of thylakoids and cristae. Journal of Plant Physiology. 257:ArticleNo.153342.
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2021.
Astrobiology: Photosynthesis in watercolours. Nature. 448:-418.
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2007.
Algal and aquatic plant carbon concentrating mechanisms in relation to environmental change. Photosynthesis Research. 109:281-296.
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2011.
Not drowning but photosynthesising probing plant plastrons. New Phytologist. 177:841-845. Abstract
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2008.
Cyanotoxins: A poison that frees phosphate. Current Biology. 20:R850-R852.
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2010.
Acquisition and metabolism of carbon in the Ochrophyta other than diatoms. Philosophical Transactions of the Royal Society B, Biological Sciences. 378:ArticleNo.20160400.
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2017.
Evolution of tree nutrition. Tree Physiology. 30:1050-1071.
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2010.
Rubisco: still the most abundant protein of Earth? New Phytologist. 198:1-3.
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2013.
Photosynthesis in reproductive structures: costs and benefits. Journal of Experimental Botany. 66:1699-1705.
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2015.
Origin of the roles of potassium in biology. Bioessays. :ArticleNo.e20000302.
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2020.
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2009.
Evolution and palaeophysiology of the vascular system and other means of long-distance transport. Philosophical Transactions of the Royal Society B - Biological Sciences. 373:ArticleNo.20160497.
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2018.
Algal evolution in relation to atmospheric CO2: carboxylases, carbon-concentrating mechanisms and carbon oxidation cycles. Philosophical Transactions of the Royal Society, B. 367:493-507.
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2012.
Protein assemblages and tight curves in the plasma membranes of photosynthetic eukaryotes. Journal of Plant Physiology. 256:ArticleNo.153330.
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2021.
Active water transport in unicellular algae: where, why, and how. Journal of Experimental Botany. 65:6279-6292.
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2014.