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Publications list

Found 5892 results

2009
Subbarao GV, Kishii M, Nakahara K, Ishikawa T, Ban T, Tsujimoto H, George TS, Berry WL, Hash CT, Ito O.  2009.  Biological nitrification inhibition (BNI) - Is there potential for genetic interventions in Triticeae? Breeding Science. 59:529-545.
Cock PJA, Antao T, Chang JT, Chapman BA, Cox CJ, Dalko A, Friedberg I, Hamelryck T, Kauff F, Wilczynski B et al..  2009.  Biopython: freely available Python tools for computational molecular biology and bioinformatics. Bioinformatics. 25:1422-1423.
Harrison BD.  2009.  A brief outline of the development of plant virology in the 20th century. Journal of Plant Pathology. 91:509-520.
Peter KA, Gildow FE, Palukaitis P, Gray SM.  2009.  The C-terminus of the Polerovirus P5 readthrough domain limits virus infection to the phloem. Journal of Virology. 83:5419-5429. Abstract
Hillier J, Hawes C, Squire GR, Hilton A, Wale S, Smith P.  2009.  The carbon footprints of food crop production. International Journal of Agicultural Sustainability. 7:107-118.
Eaton SL, Anderson MJ, Hamilton S, Gonz L, Sales J, Jeffrey M, Reid HW, Rocchi MA, Chianini F.  2009.  CD21 B cell populations are altered following subcutaneous scrapie inoculation in sheep. Veterinary Immunology and Immunopathology. 131:105-109.
Hudacsek P, Bransby MF, Hallett PD, Bengough AG.  2009.  Centrifuge modelling of climatic effects on clay embankments. Proceedings of the Institution of Civil Engineers - Engineering Sustainability. 162:91-100.
Koza A, Hallett PD, Moon CD, Spiers AJ.  2009.  Characterisation of a novel air-liquid interface biofilm of Pseudomonas fluorescens SBW25. Microbiology. 155:1397-1406.
Adam MAM, Phillips MS, Tzortzakakis M, Blok VC.  2009.  Characterisation of mjap genes encoding novel secreted proteins from the root-knot nematode, Meloidogyne javanica. Nematology. 11:253-265.
Prashar A, Hocking PM, Erichsen JT, Fan Q, Saw S-M, Guggenheim JA.  2009.  Common determinants of body size and eye size in chickens from an advanced intercross line. Experimental Eye Research. 89:42-48.
Schreiber AWJ, Sutton T, Caldo RA, Kalashyan E, Lovell B, Mayo G, Muehlbauer G, Druka A, Waugh R, Wise RP et al..  2009.  Comparative transcriptomics in the Triticeae. BMC Genomics. 10:-285. Abstract
Barker H, McGeachy KD, Toplak N, Gruden K, Zel J, Browning I.  2009.  Comparison of genome sequence of PVY isolates with biological properties. American Journal of Potato Research. 86:227-238.
Van Toor R, Malloch G, Fenton B.  2009.  A concept for management of virus-vectors and insecticide resistance in Myzus persicae on potatoes. Redia. XCII:219-221.
Cockell CS, Kaltenegger L, Raven JA.  2009.  Cryptic photosynthesis - extrasolar planetary oxygen without a surface biological signature. Astrobiology. 9:623-636.
Squire GR, Hawes C, Begg GS, Young MW.  2009.  Cumulative impact of GM herbicide-tolerant cropping on arable plants assessed through species-based and functional taxonomies. Environmental Science and Pollution Research. 16:85-94. Abstract
Cockell CS, L A, Fridlund M, Herbst TM, Kaltenegger L, Absil O, Beichman C, Benz W, Blanc M, Brack A et al..  2009.  Darwin - a mission to detect and search for life on extrasolar planets. Astrobiology. 9:1-22.
McKenzie BM, Bengough AG, Hallett PD, Thomas WTB, Forster BP, McNicol JW.  2009.  Deep rooting and drought screening of cereal crops: A novel field-based method and its application.. Field Crops Research. 112:165-171. Abstract
Newton AC, Begg GS, Swanston JS.  2009.  Deployment of diversity for enhanced crop function. Annals of Applied Biology. 154:309-322. Abstract
Stokes A, Atger C, Bengough AG, Fourcaud T, Sidle RC.  2009.  Desirable plant root traits for protecting natural and engineered slopes against landslides (Invited review). Plant and Soil. 324:1-30.
Close TJ, Bhat PR, Lonardi S, Wu Y, Rostoks N, Ramsay L, Druka A, Stein N, Svensson JT, Wanamaker S et al..  2009.  Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics. 10:-582.
Kopecky D, Bartos J, Lukaszewski AJ, Baird JH, Cernoch V, K R, Rognli OA, Blois H, Caig V, Lubberstedt T et al..  2009.  Development and mapping of DArT markers within the Festuca - Lolium complex. BMC Genomics. 10:-473.
Brennan RM, Jorgensen L, Gordon SL, Loades K, Hackett CA, Russell JR.  2009.  The development of a PCR-based marker linked to resistance to the blackcurrant gall mite (Cecidophyopsis ribis Acari: Eriophyidae). Theoretical and Applied Genetics. 118:205-211. Abstract
Bartley PM, Wright SE, Maley SW, Buxton D, Nath M, Innes EA.  2009.  The development of immune responses in Balb/c mice following inoculation with attenuated or virulent Neospora caninum tachyzoites. Parasite Immunology. 31:392-401.
Uibopuu A, Moora M, Saks U, Daniell TJ, Zobel M, Opik M.  2009.  Differential effect of arbuscular mycorrhizal fungal communities from ecosystems along management gradient on the growth of forest understorey plant species. Soil Biology & Biochemistry. 41:2141-2146.
Hallett PD, Feeney D, Bengough AG, Rillig MC, Scrimgeour CM, Young IM.  2009.  Disentangling the impact of AM fungi versus roots on soil structure and water transport. Plant and Soil. 314:183-196. Abstract
Dawson IK, Hedley PE, Guarino L, Jaenicke H.  2009.  Does biotechnology have a role in the promotion of underutilised crops? Food Policy. 34:319-328.
Makarov VV, Rybakova EN, Efimov AV, Dobrov EN, Serebryakova MV, Solovyev AG, Yaminsky IV, Taliansky ME, Morozov SV, Kalinina NO.  2009.  Domain organization of the N-terminal portion of hordeivirus movement protein TGBp1. Journal of General Virology. 90:3022-3032.
Koroleva OA, Calder G, Pendle AF, Kim S-H, Lewandowska D, Simpson CG, Jones IM, Brown JWS, Shaw PJ.  2009.  Dynamic behaviour of Arabidopsis eIF4A-III, putative core protein of exon junction complex: fast relocation to nucleolus and splicing speckles under hypoxia. Plant Cell. 21:1592-1606.
Barr P, McKenzie BM, Hallett PD.  2009.  Earthworms bring compacted and loose soils to a similar mechanical state. Soil Biology & Biochemistry. 41:656-658. Abstract
Yang D, Zhang T, Zhang K, Greenwood DJ, Hammond JP, White PJ.  2009.  An easily implemented agro-hydrological procedure with dynamic root simulation for water transfer in the crop-soil system: Validation and application. Journal of Hydrology. 370:177-190. Abstract
Wookey PA, Aerts R, Bardgett RD, Baptist F, Brathan KA, Cornelissen JHC, Gough L, Hartley IP, Hopkins DW, Lavorerl S et al..  2009.  Ecosystem feedbacks and cascade processes: understanding their role in the responses of Arctic and alpine ecosystems to environmental change. Global Change Biology. 15:1153-1172. Abstract
Wypijewski K, Hornyik C, Shaw JA, Stephens J, Goraczniak R, Gunderson SI, Lacomme C.  2009.  Ectopic 5' splice sites inhibit gene expression by engaging RNA surveillance and silencing pathways in plants. Plant Physiology. 151:955-965.
Pawlett M, Hopkins DW, Moffett BF, Harris JA.  2009.  The effect of earthworms and liming on soil microbial communities. Biology and Fertility of Soils. 45:361-369. Abstract
Ramirez-Farias C, Slezak K, Fuller Z, Duncan A, Holtrop G, Louis P.  2009.  Effect of inulin on the human gut microbiota: stimulation of Bifidobacterium adolescentis and Faecalibacterium prausnitzii. British Journal of Nutrition. 101:541-550.
Gregory AS, Watts CW, Griffiths BS, Hallett PD, Kuan HL, Whitmore AP.  2009.  The effect of long-term soil management on the physical and biological resilience of a range of arable and grassland soils in England. Geoderma. 153:172-185.
Wemelsfelder F, Nevison IM, Lawrence AB.  2009.  The effect of perceived environmental background on qualitative assessments of pig behaviour. Animal Behaviour. 78:477-484.
Wojciechowski T, Gooding MJ, Ramsay L, Gregory PJ.  2009.  The effects of dwarfing genes on seedling root growth of wheat. Journal of Experimental Botany. 60:2565-2573.
Brown KL, Wathne GJ, Sales J, Bruce ME, Mabbott NA.  2009.  The effects of host age on follicular dendritic cell status dramatically impair scrapie agent neuroinvasion in aged mice. Journal of Immunology. 183:5199-5207.
Newton AC, Guy DC.  2009.  The effects of uneven patchy cultivar mixtures on disease control and yield in winter barley. Field Crops Research. 110:225-228. Abstract
Glasbey CA, Khondoker MR.  2009.  Efficiency of functional regression estimators for combining multiple laser scans of cDNA microarrays. Biometrical Journal. 51:45-55.
Waugh R, Jannink JL, Muehlbauer GJ, Ramsay L.  2009.  The emergence of whole genome association scans in barley. Current Opinion in Plant Biology. 12:218-222.
Kassim A, Poette J, Paterson A, Zait D, McCallum S, Woodhead M, Smith K, Hackett CA, Graham J.  2009.  Environmental and seasonal influences on red raspberry anthocyanin antioxidant contents and identification of quantitative traits loci (QTL). Molecular Nutrition and Food Research. 53:625-634. Abstract
Le Gall O, Sanfacon H, Ikegami M, Iwanami T, Jones AT, Karasev A, Lehto K, Wellink J, Wetzel T, Yoshikawa N.  2009.  Erratum: Cheravirus and Sadwavirus: two unassigned genera of plant positive-sense single-stranded RNA viruses formerly considered atypical members of the genus Nepovirus (family Comoviridae). Archives of Virology. 154:1019-1019.
Cornulier T, Elston DA, Arcese P, Benton TG, Douglas DJT, Lambin X, Reid J, Robinson RA, Sutherland WJ.  2009.  Estimating the annual number of breeding attempts from breeding dates using mixture models. Ecology Letters. 12:1184-1193.
Ashman MR, Hallett PD, Brookes PC, Allen J.  2009.  Evaluating soil stabilisation by biological processes using step-wise aggregate fractionation. Soil and Tillage Research. 102:209-215.
Thiel T, Graner A, Waugh R, Grosse I, Close TJ, Stein N.  2009.  Evidence and evolutionary analysis of ancient whole-genome duplication in barley predating the divergence from rice. BMC Evolutionary Biology. 9:-209.
Lokossou AA, Park TH, van Arkel G, Arens M, Ruyter-Spira C, Morales J, Whisson SC, Birch PRJ, Visser RGF, Jacobsen E et al..  2009.  Exploiting knowledge of R/Avr genes to rapidly clone a new LZ-NBS-LRR family of late blight resistance genes from potato linkage group IV. Molecular Plant-Microbe Interactions. 22:630-641.
Low JC, Chambers J, McKelvey WAC, McKendrick IJ, Jeffrey M.  2009.  Failure to transmit scrapie infection by transferring preimplantation embryos from naturally infected donor sheep. Theriogenology. 72:809-816.
Cole C, Sobala A, Lu C, Thatcher SR, Bowman A, Brown JWS, Green PJ, Barton GJ, Hutvagner G.  2009.  Filtering of deep sequencing data reveals the existence of abundant Dicer-dependent small RNAs derived from tRNAs. RNA. 15:2147-2160.
Osterrieder A, Carvalho CM, Latijnhouwers M, Johansen JN, Stubbs C, Botchway S, Hawes CL.  2009.  Fluorescence lifetime imaging of interactions between Golgi tethering factors and small GTPases in plants. Traffic. 10:1034-1046.
Al-Mrabeh A, Ziegler A, Cowan GH, Torrance L.  2009.  A fully recombinant ELISA using in vivo biotinylated antibody fragments for the detection of Potato leaf roll virus. Journal of Virological Methods. 159:200-205.
Hawes C, Haughton AJ, Bohan DA, Squire GR.  2009.  Functional approaches for assessing plant and invertebrate abundance patterns in arable systems. Basic and Applied Ecology. 10:34-42. Abstract
Raven JA.  2009.  Functional evolution of photochemical energy transformations in oxygen-producing organisms. Functional Plant Biology. 36:505-515.
McLellan H, Gilroy EM, Yun BW, Birch PRJ, Loake GJ.  2009.  Functional redundancy in the Arabidopsis Cathepsin B gene family contributes to basal defence, the hypersensitive response and senescence. New Phytologist. 183:408-418.
Bradshaw JE.  2009.  A genetic perspective on yield plateau in potato (Review). Potato Journal (Indian). 36:79-94.
MacFarlane SA, McGavin WJ.  2009.  Genome activation by Raspberry bushy dwarf virus coat protein. Journal of General Virology. 90:747-753.
Haas BJ, Kamoun S, Zody MC, Jiang RHY, Handsaker RE, Cano LM, Grabherr M, Kodira CD, Raffaele S, Torto-Alalibo T et al..  2009.  Genome sequence and analysis of the Irish potato famine pathogen Phytophthora infestans. Nature. 461:393-398.
Bierman S, Glasbey CA.  2009.  A graphical method for dating chicks using bivariate body measurements. Journal of Agricultural, Biological and Environmental Statistics. 14:443-451.
Dimier C, Brunet C, Geider RD, Raven JA.  2009.  Growth and photoregulation dynamics of the picoeukaryote Pelagomonas calceolata in fluctuating light. Limnology and Oceanography. 54:823-836.
Raven JA.  2009.  Horsetails get the wind up. New Phytologist. 184:6-9.
Caron-Lormier G, Bohan DA, Hawes C, Raybould A, Haughton AJ, Humphry RW.  2009.  How might we model an ecosystem? Ecological Modelling. 220:1935-1949.
Kemp HF, Meier-Augenstein W.  2009.  Human provenancing of mutilated murder victims through stable isotope profiles (Review). Minerva Medicolegale. 129:219-231.
Madsen CT, Stephens J, Hornyik C, Shaw J, Collinge DB, Lacomme C, Albrechtsen M.  2009.  Identification and characterization of barley RNA-directed RNA polymerases. Biochimica et Biophysica Acta. 1789:375-385.
Rehman S, Butterbach P, Popeijus H, Overmars H, Davis EL, Jones JT, Goverse A, Bakker J, Smant G.  2009.  Identification and characterization of the most abundant cellulases in stylet secretions from Globodera rostochiensis. Phytopathology. 99:194-202.
Jones JT, Kumar A, Pylypenko LA, Thirugnanasambandam A, Castelli L, Chapman S, Cock PJA, Grenier E, Lilley CJ, Phillips MS et al..  2009.  Identification and functional characterisation of effectors in expressed sequence tags from various life cycle stages of the potato cyst nematode Globodera pallida. Molecular Plant Pathology. 10:815-828.
Brennan RM, Graham J.  2009.  Improving fruit quality in Rubus and Ribes through breeding (Invited review). Functional Plant Science and Biotechnology. 3 Special Issue 1:22-29.
Rakhshanderhoo F, Takeshita M, Squires J, Palukaitis P.  2009.  The influence of RNA-dependent RNA polymerase 1 on Potato virus Y infection and on other antiviral response genes. Molecular Plant-Microbe Interactions. 22:1312-1318.
Maberly SC, Ball LA, Raven JA, S D.  2009.  Inorganic carbon acquisition by chrysophytes. Journal of Phycology. 45:1052-1061.
Gregory PJ, Johnson SN, Newton AC, Ingram JSI.  2009.  Integrating pests and pathogens into the climate change/food security debate. Journal of Experimental Botany. 60:2827-2838. Abstract
Smith LA, Marion G, Swain DL, White PCL, Hutchings MR.  2009.  Inter- and intra-specific exposure to parasites and pathogens via the faecal-oral route: a consequence of behaviour in a patchy environment. Epidemiology and Infection. 137:630-643.
Schulte D, Close TJ, Graner A, Langridge P, Matsumoto T, Muehlbauer GJ, Sato K, Schulman AH, Waugh R, Wise RP et al..  2009.  International Barley Sequencing Consortium - at the threshold of efficient access to the barley genome. Plant Physiology. 149:142-147. Abstract
Mahajan A, Currie CG, Mackie S, Tree J, McAteer S, McKendrick I, McNeilly TN, Roe A, La Ragione RM, Woodward MJ et al..  2009.  An investigation of the expression and adhesin function of H7 flagella in the interaction of Escherichia coli O157:H7 with bovine intestinal epithelium. Cellular Microbiology. 11:121-137.
Hopkins DW, Sparrow AD, Gregorich EG, Elberling B, Novis P, Fraser F, Scrimgeour CM, Dennis PG, Meier-Augenstein W, Greenfield LG.  2009.  Isotopic evidence for the provenance and turnover of organic carbon by soil microorganisms in the Antarctic dry valleys. Environmental Microbiology. 11:597-608. Abstract
Opik M, Metsis M, Daniell TJ, Zobel M, Moora M.  2009.  Large-scale parallel 454 sequencing reveals host ecological group specificity of arbuscular mycorrhizal fungi in a boreonemoral forest. New Phytologist. 184:424-437.
Torres-Ca P, Hinojosa MB, Garcia-Ruiz R, Daniell TJ, Carreira JA.  2009.  Linking biogeochemical variability and microbial community structure in forest soils: Abies pinsapo-fir forests as a study case. Ecosistemas. 18:91-102.
Dennis PG, Hirsch PR, Smith SJ, Taylor RG, Valsami-Jones E, Miller AJ.  2009.  Linking rhizoplane pH and bacterial density at the microhabitat scale. Journal of Microbiological Methods. 76:101-104.
Braga RA, Dupuy L, Pasqual M, Cardoso RR.  2009.  Live biospeckle laser imaging of root tissues. European Biophysics Journal. 38:679-686. Abstract
Smith LA, Marion G, Swain DL, White PCL, Hutchings MR.  2009.  Livestock grazing behavior and inter- versus intraspecific disease risk via the fecal-oral route. Behavioral Ecology. 20:426-432.
Koroleva OA, Brown JWS, Shaw PJ.  2009.  Localization of eIF4A-III in the nucleolus and splicing speckles is an indicator of plant stress. Plant Signaling & Behavior. 4:1148-1151.
Baggaley NJ, Langan SJ, Futter MN, Potts JM, Dunn SM.  2009.  Long-term trends in hydro-climatology of a major Scottish mountain river. Science of the Total Environment. 407:4633-4641.
Graham J, Hackett CA, Smith K, Woodhead M, Hein I, McCallum S.  2009.  Mapping QTLs for developmental traits in raspberry from bud break to ripe fruit. Theoretical and Applied Genetics. 118:1143-1155. Abstract
Mickovski SB, Hallett PD, Bransby MF, Davies MCR, Sonnenberg R, Bengough AG.  2009.  Mechanical reinforcement of soil by willow roots: impacts of root properties and root failure mechanism. Soil Science Society of America Journal. 73:1276-1285. Abstract
Pritchard L, Liu H, Booth C, Douglas E, Fran P, Schrenzel J, Hedley PE, Birch PRJ, Toth IK.  2009.  Microarray comparative genomic hybridisation analysis incorporating genomic organisation, and application to enterobacterial plant pathogens. PLoS Computational Biology. 5:-e1000473.
Vinten AJA, Potts JM, Avery L, Strachan NJC.  2009.  Microbial pollution of water by livestock: approaches to risk assessment and mitigation. Animal. 3:744-752.
Butler A, Doherty RM, Marion G.  2009.  Model averaging to combine simulations of future global vegetation carbon stocks. Environmetrics. 20:791-811.
Karley AJ, White PJ.  2009.  Moving cationic minerals to edible tissues: potassium, magnesium, calcium (Review). Current Opinion in Plant Biology. 12:291-298. Abstract
Blower TR, Fineran PC, Johnson MJ, Toth IK, Humphreys DP, Salmond GPC.  2009.  Mutagenesis and functional characterisation of the RNA and protein components of the toxIN abortive infection and toxin-antitoxin locus of Erwinia. Journal of Bacteriology. 191:6029-6039.
Meier-Augenstein W, Kemp HF, Lock CM.  2009.  N2: A potential pitfall for bulk 2H isotope analysis of explosives and other nitrogen-rich compounds by continuous-flow isotope-ratio mass spectrometry. Rapid Communications in Mass Spectrometry. 23:2011-2016.
Graham J, Woodhead M, Smith K, Russell JR, Marshall B, Ramsay G, Squire GR.  2009.  New insight into wild red raspberry populations using simple sequence repeat markers. Journal of the American Society for Horticultural Science. 134:109-119. Abstract
Moir HJ, Gibbins CN, Buffington JM, Webb JH, Soulsby C, Brewer MJ.  2009.  A new method to identify the fluvial regimes used by spawning salmonids. Canadian Journal of Fisheries and Aquatic Sciences. 66:1404-1408.
Andrews M, Lea PJ, Raven JA, Azevedo RA.  2009.  Nitrogen use efficiency. 3. Nitrogen fixation: genes and costs. Annals of Applied Biology. 155:1-13.
Hartley IP, Hopkins DW, Garnett MH, Sommerkorn M, Wookey PA.  2009.  No evidence for compensatory thermal adaptation of soil microbial respiration in the study of Bradford et al. (2008). Ecology Letters. 12:E12-E14.
Cummings SP, Gyaneshwar P, Vinuesa P, Farruggia FT, Andrews M, Humphry D, Elliott GN, Nelson A, Orr C, Pettitt D et al..  2009.  Nodulation of Sesbania species by Rhizobium (Agrobacterium) strain IRBG74 and other Rhizobia. Environmental Microbiology. 11:2510-2525.
Garnett MH, Hartley IP, Hopkins DW, Sommerkorn M, Wookey PA.  2009.  A passive sampling method for radiocarbon analysis of soil respiration using molecular sieve. Soil Biology & Biochemistry. 41:1450-1456. Abstract
Comadran J, Thomas WTB, van Eeuwijk FA, Ceccarelli S, Grando S, Stanca AM, Pecchioni N, Akar T, Al-Yassin A, Benbelkacem A et al..  2009.  Patterns of genetic diversity and linkage disequilibrium in a highly structured Hordeum vulgare association-mapping population for the Mediterranean basin. Theoretical and Applied Genetics. 119:175-187.
Richardson AE, Hocking PJ, Simpson RJ, George TS.  2009.  Plant mechanisms to optimise access to soil phosphorus. Crop and Pasture Science. 60:124-143.
Debeljak M, Kocev D, Towers W, Jones M, Griffiths BS, Hallett PD.  2009.  Potential of multi-objective models for risk-based mapping of the resilience characteristics of soils: demonstration at a national level. Soil Use and Management. 25:66-77.
Agu RC, Swanston JS, Walker JW, Pearson SY, Bringhurst TA, Brosnan JM, Jack FR.  2009.  Predicting alcohol yield from UK soft winter wheat for grain distilling: combined influence of hardness and nitrogen measurements. Journal of the Institute of Brewing. 115:183-190.
Hein I, Birch PRJ, Danan S, Lefebvre V, Odeny DA, Gebhardt C, Trognitz F, Bryan GJ.  2009.  Progress in mapping and cloning qualitative and quantitative resistance against Phytophthora infestans in potato and its wild relatives. Potato Research. 52:215-227.
Brierley JL, Stewart JA, Lees AK.  2009.  Quantifying potato pathogen DNA in soil. Applied Soil Ecology. 41:234-238.
Marshall B, Newton AC, Zhan J.  2009.  Quantitative evolution of aggressiveness of powdery mildew under two-cultivar barley mixtures. Plant Pathology. 58:378-388. Abstract
Barnett CM, Bengough AG, McKenzie BM.  2009.  Quantitative image analysis of earthworm-mediated soil displacement. Biology and Fertility of Soils. 45:821-828.
Hancock RD.  2009.  Recent patents on vitamin C: Opportunities for crop improvement and single-step biological manufacture. Recent Patents on Food, Nutrition and Agriculture. 1:39-49. Abstract
Salse J, Abrouk M, Bolot S, Guilhot N, Courcelle E, Faraut T, Waugh R, Close TJ, Messing J, Feuillet C.  2009.  Reconstruction of monocotyledonous proto-chromosomes reveals faster evolution in plants than in animals. Proceedings of the National Academy of Sciences, USA. 106:14908-14913.
White PJ, Bradshaw JE, Dale MFB, Ramsay G, Hammond JP, Broadley MR.  2009.  Relationships between yield and mineral concentrations in potato tubers. Hortscience. 44:6-11. Abstract
Spezia L.  2009.  Reversible jump and the label switching problem in hidden Markov models. Journal of Statistical Planning and Inference. 139:2305-2315.
Barr P, Hallett PD.  2009.  Rheological stabilisation of wet soils by model root and fungal exudates depends on clay mineralogy. European Journal of Soil Science. 60:525-538. Abstract
Hinsinger P, Bengough AG, Vetterlein D, Young IM.  2009.  Rhizosphere: biophysics, biogeochemistry and ecological relevance. Plant and Soil. 321:117-152.
Ma'shum M, Tisdall JM, Borrell AK, McKenzie BM, Gill JS, Kusnarta IGM, Sukartono M, Van Cooten DE.  2009.  Rice responses to soil management in rice-based cropping system in the semi-arid tropics of southern Lombok, Eastern Indonesia. Field Crops Research. 110:197-206. Abstract
Rosso MN, Jones JT, Abad P.  2009.  RNAi and functional genomics in plant parasitic nematodes. Annual Review of Phytopathology. 47:207-232.
Wang MH, Hu XH, Li G, Leach LJ, Potokina E, Druka A, Waugh R, Kearsey MJ, Luo ZW.  2009.  Robust detection and genotyping of single feature polymorphisms from gene expression data. PLoS Computational Biology. 5:-e1000317.
Lewsey M, Surette M, Robertson FC, Ziebell H, Choi SH, Ryu KH, Canto T, Palukaitis P, Payne T, Walsh JA et al..  2009.  The role of the Cucumber mosaic virus 2b protein in viral movement and symptom induction. Molecular Plant-Microbe Interactions. 22:642-654. Abstract
Lawson DJ, Jensen HJ.  2009.  The role of weak selection and high mutation rates in nearly neutral evolution. Journal of Theoretical Biology. 257:696-703.
Gregory PJ, Bengough AG, Grinev DV, Schmidt S, Thomas WTB, Wojciechowski T, Young IM.  2009.  Root phenomics of crops - opportunities and challenges. Functional Plant Biology. 36:922-929.
McGavin WJ, MacFarlane SA.  2009.  Rubus chlorotic mottle virus, a new Sobemovirus infecting raspberry and bramble. Virus Research. 139:10-13. Abstract
Crampton BG, Hein I, Berger DK.  2009.  Salicylic acid confers resistance to a biotrophic rust pathogen, Puccinia substriata, in pearl millet (Pennisetum glaucum). Molecular Plant Pathology. 10:291-304.
Andrews M, Maule HG, Hodge S, Cherrill A, Raven JA.  2009.  Seed dormancy, nitrogen nutrition and shade acclimation of Impatiens glandulifera: implications for its successful invasion of a deciduous woodland. Plant Ecology and Diversity. 2:145-153.
Lehrach WP, Husmeier D.  2009.  Segmenting bacterial and viral DNA sequence alignments with a trans-dimensional phylogenetic factorial hidden Markov model. Journal of the Royal Statistical Society Series C - Applied Statistics. 58:307-327.
Visser RGF, Bachem CWB, de Boer JM, Bryan GJ, Chakrabati SK, Feingold S, Gromadka R, van Ham RCHJ, Huang SW, Jacobs JME et al..  2009.  Sequencing the potato genome: Outline and first results to come from the elucidation of the sequence of the world's most important food crop. American Journal of Potato Research. 86:417-429.
Hammond JP, Broadley MR, White PJ, King GJ, Bowen HC, Hayden R, Meacham MC, Mead A, Overs T, Spracklen WP et al..  2009.  Shoot yield drives phosphorus use efficiency in Brassica oleracea and correlates with root architecture traits. Journal of Experimental Botany. 60:1953-1965.
Maestre FT, Bowker M, Puche MD, Bowker M, Hinojosa MB, Mart I, Garc P, Castillo AP, Soliveres S, Luzuriaga AL et al..  2009.  Shrub encroachment can reverse desertification in semi-arid Mediterranean grasslands. Ecology Letters. 12:930-941. Abstract
Bradshaw JE, Titley M, Wilson RN.  2009.  Single seed descent as a breeding method for swedes (Brassica napus L. var. napobrassica Peterm). Euphytica. 169:387-401.
McKenzie BM, K S, MacKenzie K, Peth S, Horn R.  2009.  Soil compaction by uniaxial loading and the survival of the earthworm Aporrectodea caliginosa. Soil and Tillage Research. 104:320-323.
Hopkins DW, Waite IS, McNicol JW, Poulton PR, MacDonald AJ, O'Donnell AG.  2009.  Soil organic carbon contents in long-term experimental grassland plots in the UK (Palace Leas and Park Grass) have not changed consistently in recent decades. Global Change Biology. 15:1739-1754. Abstract
White PJ, Hammond JP.  2009.  The sources of phosphorus in the waters of Great Britain. Journal of Environmental Quality. 38:13-26. Abstract
Polechov J, Barton N, Marion G.  2009.  Species' range: adaptation in space and time. American Naturalist. 174:E186-E204.
Ki LP, Felber F, Flavell AJ, Guadagnuolo R, Guiatti D, Hauser TP, Olivieri AM, Scotti I, Syed NH, Vischi M et al..  2009.  Spontaneous gene flow and population structure in wild and cultivated chicory, Cichorium intybus L.. Genetic Resources and Crop Evolution. 56:405-419.
Shi B-J, Symons RH, Palukaitis P.  2009.  Stability and competitiveness of interviral recombinant RNAs derived from a chimeric cucumovirus. Virus Research. 140:216-221. Abstract
Farmer N, Meier-Augenstein W, Lucy D.  2009.  Stable isotope analysis of white paints and likelihood ratios. Science and Justice. 49:114-119. Abstract
Neumann G, George TS, Plassard C.  2009.  Strategies and methods for studying the rhizosphere - the plant science toolbox. Plant and SoilPlant and Soil. 321:431-456.
Tyler A, Hunter PD, Carvalho L, Codd GA, Elliott JA, Ferguson CA, Hanley ND, Hopkins DW, Maberly SC, Mearns KJ et al..  2009.  Strategies for monitoring and managing mass populations of toxic cyanobacteria in recreational waters: A multi-interdisciplinary approach. Environmental Health. 8 Supplement 1:-S11.
Weaver J, Briscoe T, Hou M, Goodman C, Kata S, Ross HA, McDougall GJ, Stewart D, Riches A.  2009.  Strawberry polyphenols are equally cytotoxic to tumourigenic and normal human breast and prostate cell lines. International Journal of Oncology. 34:777-786.
Mess A, Squire GR, Perry JN, Angevin F, Gomez M, Townend P, Sausse C, Breckling B, Langrell S, Dzeroski S et al..  2009.  Sustainable introduction of GM crops into European agriculture: a summary report of the FP6 SIGMEA research project. Ol. 16:37-51.
Pearce MC, Chase-Topping ME, McKendrick IJ, Mellor DJ, Locking ME, Allison L, Ternent HE, Matthews L, Knight HI, Smith AW et al..  2009.  Temporal and spatial patterns of bovine Escherichia coli O157 prevalence and comparison of temporal changes in the patterns of phage types associated with bovine shedding and human E. coli O157 cases in Scotland between 1998-2000 and 2002-2004. BMC Microbiology. 9:-276.
Wright HW, Bartley K, Nisbet AJ, McDevitt RM, Sparks NHC, Brocklehurst S, Huntley JF.  2009.  The testing of antibodies raised against poultry red mite antigens in an in vitro feeding assay; preliminary screen for vaccine candidates. Experimental and Applied Acarology. 48:81-91.
Hurd CL, Hepburn CD, Currie KI, Raven JA, Hunter KA.  2009.  Testing the effects of ocean acidification on algal metabolism: considerations for experimental designs. Journal of Phycology. 45:1236-1251.
Jones HG, Serraj R, Loveys BR, Xiong LH, Wheaton A, Price AH.  2009.  Thermal infrared imaging of crop canopies for the remote diagnosis and quantification of plant responses to water stress in the field.. Functional Plant Biology. 36:978-989.
Goodall N, Kisiswa L, Prashar A, Faulkner S, Tokarczuk P, Singh K, Erichsen JT, Guggenheim J, Halfter W, Wride MA.  2009.  Three-dimensional modelling of chick embryo eye development and growth using high resolution magnetic resonance imaging. Experimental Eye Research. 89:511-521.
Milne I, Lindner D, Bayer M, Husmeier D, McGuire G, Marshall DF, Wright F.  2009.  TOPALi v2: a rich graphical interface for evolutionary analyses of multiple alignments on HPC clusters and multi-core desktops. Bioinformatics. 25:126-127.
Birch PRJ, Armstrong MR, Bos J, Boevink P, Gilroy EM, Taylor RM, Wawra S, Pritchard L, Conti L, Ewan R et al..  2009.  Towards understanding the virulence functions of RXLR effectors of the oomycete plant pathogen Phytophthora infestans (Review). Journal of Experimental Botany. 60:1133-1140.
Margaritopoulos JT, Kasprowicz L, Malloch GL, Fenton B.  2009.  Tracking the global dispersal of a cosmopolitan insect pest, the peach potato aphid. BMC Ecology. 9:-13. Abstract
Potokina E, Druka A, Kearsey MJ.  2009.  Transcript profiling and expression level mapping. Methods in Molecular Biology. 513:81-92.
Foito A, Byrne SL, Shepherd T, Stewart D, Barth S.  2009.  Transcriptional and metabolic profiles of Lolium perenne L. genotypes in response to a PEG induced water stress. Plant Biotechnology Journal. 7:719-732.
Potokina E, Druka A, Luo ZW, Waugh R, Kearsey MJ.  2009.  The transcriptome analysis of barley (Hordeum vulgare L.) using the Affymetrix Barley1 GeneChip. Russian Journal of Genetics. 45:1317-1328.
van Dijk JP, Cankar K, Scheffer SJ, Beenen HGJ, Shepherd LVT, Stewart D, Davies HV, Wilcockson SJ, Leifert C, Gruden K et al..  2009.  Transcriptome analysis of potato tubers - effects of different agricultural practices. Journal of Agricultural and Food Chemistry. 57:1612-1623. Abstract
Bahar B, Moloney AP, Monahan FJ, Harrison SM, Zazzo A, Scrimgeour CM, Begley IS, Schmidt O.  2009.  Turnover of carbon, nitrogen and sulfur in bovine longissimus dorsi and psoas major muscles: Implications for isotopic authentication of meat. Journal of Animal Science. 87:905-913.
Glasbey CA.  2009.  Two-dimensional generalisations of dynamic programming for image analysis. Statistics and Computing. 19:49-56.
Torrance L, Lukhovitskaya NI, Schepetilnikov MV, Cowan GH, Ziegler A, Savenkov EI.  2009.  Unusual long-distance movement strategies of Potato mop-top virus RNAs in Nicotiana benthamiana. Molecular Plant-Microbe Interactions. 22:381-390.
Davidson RS, Marion G, White PCL, Hutchings MR.  2009.  Use of host population reduction to control wildlife infection: rabbits and paratuberculosis. Epidemiology and Infection. 137:131-138.
Crosley LK, Duthie SJ, Polley AC, Bouwman FG, Heim C, Mulholland F, Horgan GW, Johnson IT, Mariman EC, Elliott RM et al..  2009.  Variation in protein levels obtained from human blood cells and biofluids for platelet, peripheral blood mononuclear cell, plasma, urine and saliva proteomics. Genes and Nutrition. 4:95-102.
Swanson MM, Fraser G, Daniell TJ, Torrance L, Gregory PJ, Taliansky ME.  2009.  Viruses in soils: morphological diversity and abundance in the rhizosphere. Annals of Applied Biology. 155:51-60. Abstract
Hein I, Gilroy EM, Armstrong MR, Birch PRJ.  2009.  The zig-zag-zig in oomycete-plant interactions. Molecular Plant Pathology. 10:547-562.
2010
Vinichuk M, Taylor AFS, Rosen K, Johanson KJ.  2010.  Accumulation of potassium, rubidium and caesium (133Cs and 137Cs) in various fractions of soil and fungi in a Swedish forest. The Science of the Total Environment. 408:2543-2548.
Pearce ISK, Britton AJ, Armitage HF, Jones B.  2010.  Additive impacts of nitrogen deposition and grazing on a mountain moss-sedge heath. Botanica Helvetica.. 120(2):129-137.
Subedi M, Hocking TJ, Fullen MA, McCrea AR, Milne E.  2010.  Agro-environmental project duration and effectiveness in South-East Asia. Outlook on Agriculture. 39(2):107-113.
Ode A, Hagerhall C, Sang N.  2010.  Analysing visual landscape complexity: theory and application. Landscape Research. 35(1):111-131.
Reyers B, Pettorelli N, Katzner T, Gompper ME, Redpath S, Garner TWJ, Altwegg R, Reed DH, Gordon IJ.  2010.  Animal conservation and ecosystem services: garnering the support of mightier forces. Animal Conservation. 13(6):523-525.
Shand CA, Balsam M, Hillier SJ, Hudson G, Newman G, Arthur JR, Nicol F.  2010.  Aqua regia extractable selenium contents of some Scottish topsoils measured by ICP-MS and the relationship with mineral and organic components. Journal of the Science of Food and Agriculture. 90(6):972-980.
Singh BK.  2010.  Archaea in a hyper-arid polar desert. Proceedings of the National Academy of Sciences of the USA.. 107(2):E1-E1.
Lennon JJ, Beale CM, Reid CL, Kent M, Pakeman RJ.  2010.  Are richness patterns of common and rare species equally well explained by environmental variables? Ecography. 34(4):529-539.
Burgess PJ, Moffat AJ, Matthews RB.  2010.  Assessing climate change causes, risks and opportunities in forestry. Outlook on Agriculture. 39(4):263-268.
Andrist Rangel Y, Hillier S, Oborn I, Lilly A, Towers W, Edwards AC, Paterson E.  2010.  Assessing potassium reserves in northern temperate grassland soils: A perspective based on quantitative mineralogical analysis and aqua-regia extractable potassium. Geoderma. 158(3-4):303-314.
Birkel CB, Dunn SM, Tetzlaff DT, Soulsby CS.  2010.  Assessing the value of high-resolution isotope tracer data in the stepwise development of a lumped conceptual rainfall-runoff model. Hydrological Processes. 24(16):2335-2348.
Clark JM, Gallego-Sala AV, Allott TEH, Chapman SJ, Farewell T, Freeman C, House JI, Orr HG, Prentice IC, Smith P.  2010.  Assessing the vulnerability of blanket peat to climate change using an ensemble of statistical bioclimatic envelope models. Climate Research. 45:131-150.
Lazar A, Butterfield D, Futter MN, Rankinen K, Thouvenot-Korpoo M, Jarrit N, Lawrence DSL, Wade AJ, Whitehead PG.  2010.  An assessment of the fine sediment dynamics in an upland river system: INCA-Sed modifications and implications for fisheries. The Science of the Total Environment. 408(12):2555-2566.
Gallego-Sala AV, Clark JM, House JI, Orr HG, Prentice IC, Smith P, Farewell T, Chapman SJ.  2010.  Bioclimatic envelope model of climate change impacts on blanket peatland distribution in Great Britain. Climate Research. 45:151-162.
Bontemps C, Elliott GN, Simon MF, dos, Reis J, F.B, Gross E, Neto NE, de Loureiro MF, de Faria SM, Sprent JI et al..  2010.  Burkholderia species are ancient symbionts of legumes. Molecular Ecology. 19(1):44-52.
Nayak DR, Miller DR, Nolan AJ, Smith P, Smith JU.  2010.  Calculating carbon budgets of wind farms on Scottish peatlands. Mires and Peat, Special Volume: Wind Farms on Peatland, 2008-2010. 4(Art. 9):1-23.
Hanson S, Nicholls RJ, Balson P, Brown I, French JR, Spencer T.  2010.  Capturing coastal geomorphological change within regional integrated assessment: an outcome-driven fuzzy logic approach. Journal of Coastal Research. 26(5):831-842.
Aspinall RJ.  2010.  A century of physical geography research in the Annals. Annals of the Association of American Geographers. 100(5):1049-1059.
Andersen R, Grasset L, Thormann MN, Rochefort L, Francez AJ.  2010.  Changes in microbial community structure and function following Sphagnum peatland restoration. Soil Biology and Biochemistry. 42(2):291-301.
Singh BK.  2010.  Climate change and human health: an environmental perspective. Climate Research. 41(1):41-44.
Munang R, Rivington M, Takle ES, Mackey B, Thiaw I, Liu J.  2010.  Climate information and capacity needs for ecosystem management under a changing climate. Procedia Environmental Sciences. 1:206-227.
Conniff A, Craig T, Laing R, Galan-Diaz C.  2010.  A comparison of active navigation and passive observation of desktop models of future built environments. Design Studies. 31(5):419-438.
Farmer JG, Eades LJ, Graham MC, Cloy JM, Bacon JR.  2010.  A comparison of the isotopic composition of lead in rainwater, surface vegetation and tree bark at the long-term monitoring site, Glensaugh, Scotland in 2007. The Science of the Total Environment. 408(17):3704-3710.
Richards M, McDonald AJS, Aitkenhead MJ.  2010.  Competition indices for predicting the radial growth of Scots pine in spatially heterogeneous forest. Ecological Modelling. 221(13-14):1649-1654.

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The James Hutton Research Institute is the result of the merger in April 2011 of MLURI and SCRI. This merger formed a new powerhouse for research into food, land use, and climate change.