Publications list
Algae lacking carbon concentrating mechanisms. Canadian Journal of Botany. 83:879-890.
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2005.
The ins and outs of CO2. Journal of Experimental Botany. 67:1-13.
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2016.
Protein turnover and plant RNA and phosphorus requirements in relation to nitrogen fixation. Plant Science. 188-189:25-35.
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2012.
Transpiration: how many functions? New Phytologist. 179:905-908. Abstract
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2008.
CO2 concentrating mechanisms and environmental change. Aquatic Botany. 118:24-37.
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2014.
Inorganic carbon acquisition by eukaryotic algae: four current questions. Photosynthesis Research. 106:123-134.
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2010.
Carbon sequestration: Photosynthesis and subsequent processes. Current Biology. 16:R165-R167. Abstract
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2006.
Iron acquisition and allocation in stramenopile algae. Journal of Experimental Botany. 64:2119-2127.
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2013.
The evolution of oligotrophy: implications for the breeding of crop plants for low input agricultural systems. Annals of Applied Biology. 146:261-280. Abstract
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2005.
Horsetails get the wind up. New Phytologist. 184:6-9.
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2009.
Climate: baselines for the biological effects of environmental change. Current Biology. 21:R190-R192.
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2011.
Compartmentation of defensive compound synthesis in a red alga. Journal of Phycology. 51:222-224.
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2015.
How long have photosynthetic organisms been aggregating soils? New Phytologist. 219:1139-1141.
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2018.
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2020.
Chloride: essential micronutrient and multifunctional beneficial ion. Journal of Experimental Botany. 68:359-367.
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2017.
The potential effect of low cell osmolarity on cell function through decreased concentration of enzyme substrates. Journal of Experimental Botany. 69:4667-4673.
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2018.
Life at the boundary: photosynthesis at the soil-fluid interface. A synthesis focusing on mosses (vol 67, page 1613, 2016). Correction. Journal of Experimental Botany. 68:5247.
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2017.
The evolution of inorganic carbon concentrating mechanisms in photosynthesis. Philosophical Transactions of the Royal Society of London B - Biological Sciences. 363:2641-2650. Abstract
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2008.
Enhanced biofuel production using optimality, pathway modification and waste minimization. Journal of Applied Phycology. 27:1-31.
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2015.
Life at the boundary: photosynthesis at the soil-fluid interface. A synthesis focusing on mosses. Journal of Experimental Botany. 67:1613-1623.
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2016.
Speedy small stomata? Journal of Experimental Botany. 65:1415-1424.
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2014.
Grasses. Current Biology. 20:R837-R839.
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2010.
Aquatic viruses: the emerging story. Journal of the Marine Biological Association of the United Kingdom. 86:449-451. Abstract
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2006.
Cells inside cells: symbiosis and continuing phagotrophy. Current Biology. 23:R530-R531.
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2013.
Q&A - John Raven. Current Biology. 15:R905-R906. Abstract
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2005.
Functional evolution of photochemical energy transformations in oxygen-producing organisms. Functional Plant Biology. 36:505-515.
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2009.
Costs of acquiring phosphorus by vascular land plants: patterns and implications for plant coexistence. New Phytologist. 217:1420-1427.
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2018.
Ecophysiology of photosynthesis in macroalgae. Photosynthesis Research. 113:105-125.
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2012.
Blue carbon: past, present and future, with emphasis on macroalgae. Biology Letters. 14:ArticleNo.20180336.
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2018.
Algae. Current Biology. 24:R590-R595.
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2014.
Sensing inorganic carbon: C02 and HCO3. Biochemical Journal. 396:e5-e7.
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2006.
Environmental controls on coccolithophore calcification. Marine Ecology Progress Series. 470:137-166.
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2012.
The possible roles of algae in restricting the increase in atmospheric CO2 and global temperature. European Journal of Phycology. 52:506-522.
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2017.
Determinants, and implications, of the shape and size of thylakoids and cristae. Journal of Plant Physiology. 257:ArticleNo.153342.
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2021.
Astrobiology: Photosynthesis in watercolours. Nature. 448:-418.
.
2007.
Algal and aquatic plant carbon concentrating mechanisms in relation to environmental change. Photosynthesis Research. 109:281-296.
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2011.
Not drowning but photosynthesising probing plant plastrons. New Phytologist. 177:841-845. Abstract
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2008.
Cyanotoxins: A poison that frees phosphate. Current Biology. 20:R850-R852.
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2010.
Energizing the plasmalemma of marine photosynthetic organisms: the role of primary active transport. Journal of the Marine Biological Association of the United Kingdom. 100:333-346.
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2020.
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2021.
From bits to bites: advancement of the Germinate platform to support prebreeding informatics for crop wild relatives. Crop Science. Published online.
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2021.
Crop establishment practices are a driver of the plant microbiota in winter oilseed rape (Brassica napus). Frontiers in Microbiology. 8:ArticleNo.1489.
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2017.
Message ends: RNA Processing and flowering time control. Journal of Experimental Botany. 65:353-363.
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2014.
Redox control of aphid resistance through altered cell wall composition and nutritional quality. Plant Physiology. 175:259-271.
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2017.
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2019.
The impact of dispersal, plant genotype and nematodes on arbuscular mycorrhizal fungal colonization. Soil Biology and Biochemistry. 132:28-35.
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2019.
Impact of lambda-cyhalothrin on a macroinvertebrate assemblage in outdoor experimental channels: Implications for ecosystem functioning. Aquatic Toxicology. 90(3):228-234.
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2008.
Stream ecosystem properties and processes along a temperature gradient. Aquatic Ecology. 45:231-242.
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2011.
BaRTv1.0: a barley reference transcript dataset for quantitative measurement barley transcriptomes using RNA-seq. BMC Genomics. 20:ArticleNo.968.
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2019.
Stable isotope probing analysis of the influence of liming on root exudate utilization by soil microrganisms. Environmental Microbiology. 7:828-838. Abstract
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2005.
Flux and turnover of fixed carbon in soil microbial biomass of limed and un-limed plots of an upland grassland ecosystem. Environmental Microbiology. 7:544-552. Abstract
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2005.
Sequence diversity in the large subunit of RNA polymerase I contributes to Mefenoxam insensitivity in Phytophthora infestans. Molecular Plant Pathology. 15:664-676.
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2014.
Large-scale gene discovery in the oomycete Phytophthora infestans reveals likely components of phytopathogenicity shared with true fungi. Molecular Plant-Microbe Interactions. 18:229-243. Abstract
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2005.
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2007.
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2011.
Patterns of solanidine glycoalkaloid variation in four gene pools of the cultivated potato. Genetic Resources and Crop Evolution. 51:805-813. Abstract
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2005.
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2005.
Selection of trees for rubbing by red and roe deer in forest plantations. Forest Ecology and Management. 222(1-3):39-45.
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2006.
Effect of inulin on the human gut microbiota: stimulation of Bifidobacterium adolescentis and Faecalibacterium prausnitzii. British Journal of Nutrition. 101:541-550.
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2009.
Effect of inulin on the human gut microbiota: stimulation of Bifidobacterium adolescentis and Faecalibacterium prausnitzii. British Journal of Nutrition. 101(4):541-550.
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2009.
.
2013.
Assessing biogas digestate, pot ale, wood ash and rockdust as soil amendments: effects on soil chemistry and microbial community composition. Acta Agriculturae Scandinavica, Section B: Soil and Plant Science.
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2015.
Comparing capillary rise contact angles of soil aggregates and homogenised soil. Geoderma. 146:336-343. Abstract
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2008.
Two RNA-binding sites in plant fibrillarin provide interactions with various RNA substrates. Nucleic Acids Research. 39:8869-8880.
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2011.
The influence of RNA-dependent RNA polymerase 1 on Potato virus Y infection and on other antiviral response genes. Molecular Plant-Microbe Interactions. 22:1312-1318.
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2009.
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2017.
One century of Nordic barley breeding: nitrogen use efficiency, agronomic traits and genetic diversity. Journal of Agricultural Science. 155:582-598.
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2017.
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2021.
.
2008.
The maximum growth rate hypothesis is correct for eukaryotic photosynthetic organisms, but not cyanobacteria. New Phytologist. Published online..
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2021.
Molecular barley breeding. Euphytica. 158:295-303. Abstract
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2007.
.
2019.
Involvement of the nuclear cap-binding protein complex in alternative splicing in Arabidopsis thaliana.. Nucleic Acids Research. 38:265-278.
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2010.
The SERRATE protein is involved in alternative splicing in Arabidopsis thaliana (vol 42, 1224, 2014). Correction. Nucleic Acids Research. 48:1604-1605.
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2020.
The SERRATE protein is involved in alternative splicing in Arabidopsis thaliana. Nucleic Acids Research. 42:1224-1244.
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2014.
Calluna vulgaris-dominated upland heathland sequesters more CO2 annually than grass-dominated upland heathland. Science of the Total Environment.. 505:740-747.
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2015.
Restoration of upland heath from a graminoid- to a Calluna vulgaris-dominated community provides a carbon benefit. Agriculture, Ecosystems and Environment. 185:133-143.
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2014.
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2013.
Unearthing human pathogens at the agricultural-environment interface: A review of current methods for the detection of Escherichia coli O157 in freshwater ecosystems. Agriculture, Ecosystems and Environment. 140:354-360.
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2011.
Can macrophyte harvesting from eutrophic water close the loop on nutrient loss from agricultural land? Journal of Environmental Management. 152:210-217.
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2015.
Limitations on microalgal growth at very low photon fluence rates: the role of energy slippage. Photosynthesis Research. 88:299-310. Abstract
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2006.
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2019.
Regulated RNA processing in the control of Arabidopsis flowering. International Journal of Developmental Biology. 49:773-780.
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2005.
Occurrence of trace elements and antibiotics in manure- based fertilizers from the Zhejiang Province of China. Science of the Total Environment. 559:174-181.
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2016.
Observed soil temperature trends associated with climate change in Canada. Journal of Geophysical Research. 116:16pp.
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2011.
The high affinity K+ transporter AtHAK5 plays a physiological role in planta at very low K+ concentrations and provides a caesium uptake pathway in Arabidopsis. Journal of Experimental Botany. 59:595-607. Abstract
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2008.
Identification of Globodera rostochiensis and G. pallida in the Ukraine by PCR. European Journal of Plant Pathology. 111:39-46. Abstract
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2005.
.
2008.
Global environmental change: local perceptions, understandings, and explanations. Ecology and Society. 21:ArticleNo.25.
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2016.
Stable carbon isotope analysis of fluvial sediment fluxes over two contrasting C4-C3 semi-arid vegetation transitions. Rapid Communications in Mass Spectrometry. 26:2386-2392.
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2012.
Woody plant encroachment into grasslands leads to accelerated erosion of previously stable organic carbon from dryland soils. Journal of Geophysical Research-Biogeosciences. 119:2345-2357.
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2014.
Changes in ecosystem structure, function and hydrological connectivity control water, soil and carbon losses in semi-arid grass to woody vegetation transitions. Earth Surface Processes and Landforms. 38:1602-1611.
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2013.
Impacts of climate, host and landscape factors on Culicoides species in Scotland. Medical and Veterinary Entomology. 26:168-177.
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2012.
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2021.
Examining phenotypic traits contributing to the spread in northern European potato crops of EU_41_A2, a new clonal lineage of Phytophthora infestans. a new clonal lineage of Phytophthora infestans.. :414-421.
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2021.
Examining phenotypic traits contributing to the spread in northern European potato crops of EU_41_A2, a new clonal lineage of Phytophthora infestans. a new clonal lineage of Phytophthora infestans.. :414-421.
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2021.
Cadmium, lead, and zinc mobility and plant uptake in a mine soil amended with sugarcane straw biochar. Environmental Science and Pollution Research. 22:17606-17614.
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2015.
Biochar application to a contaminated soil reduces the availability and plant uptake of zinc, lead and cadmium. Journal of Environmental Management. 159:86-93.
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2015.
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2008.
Barley adaptation and improvement in the Mediterranean basin. Plant Breeding. 127:554-560.
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2008.
Employment effects of private investment initiatives in rural areas of southern Europe: a regional SAM approach. Agricultural Economics Review (Greek Association of Agricultural Economists). 12:50-61.
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2011.
Essay - The role of ecological theory in microbial ecology. Nature Reviews Microbiology. 5(5):384-392.
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2007.
Mechanistic interpretation of the varying selectivity of Cesium-137 and potassium uptake by radish (Raphanus sativus L.) under field conditions near Chernobyl. Journal of Environmental Radioactivity. 152:85-91.
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2016.
A general model of error-prone PCR. Journal of Theoretical Biology. 234:497-509. Abstract
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2005.
The zigzag model of plant-microbe interactions: is it time to move on? Molecular Plant Pathology. 15:865-870.
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2014.
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2013.
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2011.
.
2012.
GenomeDiagram: A python package for the visualisation of large-scale genomic data. Bioinformatics. 22:616-617. Abstract
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2006.
Draft Genome Sequences of 17 isolates of the plant pathogenic bacterium Dickeya. Genome Announcements. 1:e00978-13.
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2013.
Microarray comparative genomic hybridisation analysis incorporating genomic organisation, and application to enterobacterial plant pathogens. PLoS Computational Biology. 5:-e1000473.
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2009.
Draft genome sequences of four Dickeya dianthicola and four Dickeya solani strains. Genome Announcements. 1:e0087-12.
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2013.
Genomics and taxonomy in diagnostics for food security: soft-rotting enterobacterial plant pathogens. Analytical Methods. 8:12-24.
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2016.
Birds bias offspring sex ratio in response to livestock grazing. Biology Letters. 7:958-960.
.
2011.
Are scientific editors reliable gatekeepers of the publication process. Biological Conservation. 238:ArticleNo.108232.
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2019.
Biodiversity gains? The debate on changes in local- vs global-scale species richness Biological Conservation. 219:A1-A3.
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2018.
Metabarcoding analysis of phytophthora diversity using genus-specific primers and 454 pyrosequencing. Phytopathology. 106:305-313.
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2016.
Molecular analysis of Phytophthora diversity in nursery-grown ornamental and fruit plants. Plant Pathology. 64:1308-1319.
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2015.
Surface coat proteins of the potato cyst nematode, Globodera rostochiensis. Nematology. 23:113-123.
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2021.
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2014.
Complex responses to movement-based disease control: when livestock trading helps. Journal of the Royal Society Interface. 14:ArticleNo.20160531.
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2017.
When to kill a cull: factors affecting the success of culling wildlife for disease control. Journal of the Royal society Interface. 16:ArticleNo.20180901.
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2019.
CO2 fluxes from drained and rewetted peatlands using a new ECOSSE model water table simulation approach. Science of Total Environment. 754:ArticleNo.142433.
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2021.
Improved models of the effects of winter chilling on blackcurrant (Ribes nigrum L.) show cultivar specific sensitivity to warm winters. Agricultural and Forest and Meteorology. 280:ArticleNo.UNSP107777.
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2020.
Learning-induced switching costs in a parasitoid can maintain diversity of host aphid phenotypes although biocontrol is destabilised under abiotic stress. Journal of Animal Ecology.. 89:1216-1229.
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2020.
Modelling contact spread of infection in host-parasitoid systems: Vertical transmission of pathogens can cause chaos. Journal of Theoretical Biology. 262:441-451.
.
2010.
A rapid marker ordering approach for high-density genetic linkage maps in experimental autotetraploid populations using multidimensional scaling. Theoretical and Applied Genetics. 129:2117-2132.
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2016.
Restoration trajectory of carabid functional traits in a formerly afforested blanket bog. Acta Zoologica Academiaea Scientiarum Hungaricae. 65:33-56.
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2019.
Silencing potential of viral-derived RNAi constructs in Tomato leaf curl virus-AC4 gene suppression in tomato. Transgenic Research. 19:45-55.
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2010.
Infra-red thermography for high throughput field phenotyping in Solanum tuberosum. PLoS ONE. 8:e65816.
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2013.
Construction of a dense SNP map of a highly heterozygous diploid potato population and QTL analysis of tuber shape and eye depth. Theoretical and Applied Genetics. 127:2159-2171.
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2014.
Common determinants of body size and eye size in chickens from an advanced intercross line. Experimental Eye Research. 89:42-48.
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2009.
Spectroscopic techniques applied to discriminate soils for forensic purposes. Soil Research. 58:151-160.
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2020.
Effects of biochar on properties of tropical sandy soils under organic agriculture. Journal of Agricultural Science, 13, 1.
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2021.
Incentives and enforcement: the institutional design and policy mix for soil conservation in Brandenburg (Germany). Land Degradation and Development, Special Issue, The Challenge of Effective Soil Conservation Policies. 22:111-123.
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2011.
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2016.
Local and regional partnerships in natural resource management: The challenge of bridging institutional levels. Environmental Management. 46(5):711-724.
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2010.
Agri-environmental collaboratives as bridging organisations in landscape management. Journal of Environmental Management. 161:375-384.
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2015.
Using mental models to understand soil management. Soil Use and Management. 32:36-44.
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2016.
Criteria for a system level evaluation of farm advisory services. Land Use Policy. 61:86-98.
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2017.
Using mental models to understand soil management. Soil Use and Management.
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2016.
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2012.
Agri-environmental collaboratives for landscape management in Europe. Current Opinion in Environmental Sustainability. 12:59-66.
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2015.
Soil degradation, farming practices, institutions and policy responses: An analytical framework. Land Degradation and Development, Special Issue, The Challenge of Effective Soil Conservation Policies.. 22:32-46.
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2011.
Achieving on-farm practice change through facilitated group learning: evaluating the effectiveness of monitor farms and discussion groups. Journal of Rural Studies. 56:1-11.
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2017.
The challenge of developing effective soil conservation policies (editorial). Land Degradation and Development, Special Issue, The Challenge of Effective Soil Conservation Policies. 22:1-4.
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2011.
How should rural policy be evaluated if it aims to foster community involvement in environmental management? Journal of Rural Studies. 37:120-1`31.
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2015.
The pseudogenes of barley. Plant Journal. 93:502-514.
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2018.
The pseudogenes of barley. The Plant Journal. 93:502-514.
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2018.
Irreproducibility in searches of scientific literature: A comparative analysis. Nature Methods. 11:14658-14668.
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2021.
Phenological changes of the most commonly-sampled ground beetle (Coleoptera: Carabidae) species in the UK Environmental Change Network. International Journal of Biometeorology. Published online..
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2018.
Changes in the phenology of the ground beetle Pterostichus madidus (Fabricius, 1775). Insect Science. 18:462-472.
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2011.
Long-term changes in ground beetle (Coleoptera: Carabidae) assemblages in Scotland. Ecological Entomology. 41:157-167.
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2016.
Phenological changes of the most commonly-sampled ground beetle (Coleoptera: Carabidae) species in the UK environmental change network. International Journal of Biometeorology. 62:1063-1074.
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2018.
Ground beetle (Coleoptera: Carabidae) population declines and phenological changes: is there a connection? Ecological Indicators. 41:15-24.
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2014.
Soil management in relation to sustainable agriculture and ecosystem services. Food Policy. 36:S72-S87.
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2011.
Soil organic matters. European Journal of Soil Science. 62:1-4.
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2011.
Deterministic processes vary during community assembly for ecologically dissimilar taxa. Nature Communications. 6
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2015.
Unpredictable assembly of arbuscular mycorrhizal fungal communities. Pedobiologia. 59:11-15.
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2016.
Extraction and identification of antioxidant polyhydroxynaphthoquinone pigments from the sea urchin, Psammechinus miliaris. LWT - Food Science and Technology. 59:455-460.
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2014.
Evolution of the seed dispersal system in barley. Cell. 162:527-539.
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2015.
Safety testing of GM-rice expressing PHA-E lectin using a new animal test design. Food and Chemical Toxicology. 45:364-377. Abstract
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2007.
Comments on 'Baseline values and change in the soil, and implications for monitoring' by R.M. Lark, P.H. Bellamy and G.J.D. Kirk. European Journal of Soil Science. 60:481-483.
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2009.
Do Marine Protected Areas deliver flows of ecosystem services to support human welfare? Marine Policy. 44:139-148.
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2014.
Oceans of opportunity or stormy seas? What does the future hold for developments in European marine policy Philosophical Transactions of the Royal Society of London, A.. 370:5682-5700.
.
2012.
Transcript profiling and expression level mapping. Methods in Molecular Biology. 513:81-92.
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2009.
The transcriptome analysis of barley (Hordeum vulgare L.) using the Affymetrix Barley1 GeneChip. Russian Journal of Genetics. 45:1317-1328.
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2009.
Tissue-dependent limited pleiotropy affects gene expression in barley. Plant Journal. 56:287-296.
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2008.
.
2008.
Applying pedagogical theories to analyse and understand learning in participatory scenario planning. Futures. 128:ArticleNo.102710.
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2021.
Dynamic modeling and target loads of sulfur and nitrogen for surface waters in Finland, Norway, Sweden, and the United Kingdom. Environmental Science and Technology. 53:5062-5070.
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2019.
A model to test how ticks and louping ill virus can be controlled by treating red grouse with acaricide. Medical and Veterinary Entomology. 27:237-246.
.
2013.
An alternative to killing? Treating wildlife to protect a valuable species from a shared parasite Parasitology. 140:247-257.
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2013.
Food security: focus on agriculture. Science. 328:172-173.
.
2010.
Controlling tick borne diseases through domestic animal management: a theoretical approach. Theoretical Ecology. 4:321-339.
.
2011.
Endophytic bacterial diversity in poplar trees growing on a btex-contaminated site: the characterisation of isolates with potential to enhance phytoremediation. Systematic and Applied Microbiology. 29(7):539-556.
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2006.
Baseline health and disease assessment of founder eastern quolls (Dasyurus Viverrinus) during a conservation translocation to mainland Australia. Journal of Wildlife Diseases. 56:547-559.
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2020.
Vulnerability of the British swine industry to classical swine fever. Scientific Reports. 7
.
2017.
The Phytophthora infestans avirulence gene Avr4 encodes an RXLR-dEER effector. Molecular Plant-Microbe Interactions. 21:1460-1470. Abstract
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2008.
Using model-based proposals for fast parameter inference on discrete state space, continuous-time Markov processes. Journal of the Royal Society Interface. 12:ArticleNo.20150225.
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2015.
Posterior-based proposals for speeding up Markov chain Monte Carlo. Royal Society Open Science. 6:ArticleNo.190619.
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2019.
Tracing the ancestry of modern bread wheats. Nature Genetics. 51:905-911.
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2019.
Mineral element composition of cabbage as affected by soil type and phosphorus and zinc fertilisation. Plant and Soil. 434:151-165.
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2019.
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2016.
Mineral element composition of cabbage as affected by soil type and phosphorus and zinc fertilisation. Plant and Soil. Published online..
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2018.
Composition of mineral elements and bioactive compounds in tartary buckwheat and wheat sprouts as affected by natural mineral-rich water. Journal of Cereal Science. 69:9-16.
.
2016.
Early responses of Brassica oleracea roots to zinc supply under sufficient and sub-optimal phosphorus supply. Frontiers in Plant Science. 10:ArticleNo.1645.
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2020.
Quantitative trait loci and candidate loci for heading date in a large population of a wide barley cross. Crop Science. 52:2469-2480.
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2012.
Quantifying and mitigating wind-induced undercatch in rainfall measurements. Water Resources Research. 54:3863-3875.
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2018.
Fugacity modelling to predict the distribution of organic contaminants in the soil: oil matrix of constructed biopiles. Chemosphere. 71(8):1432-1439.
.
2008.
Exposure assessment of carcass disposal options in the event of a notifiable exotic animal disease: application to avian influenza virus. Environmental Science and Technology. 42(9):3145.
.
2008.
Modelling systemic change in coupled socio-environmental systems. Environmental Modelling and Software. 75:318-332.
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2016.
Preface to the thematic issue on modelling systemic change in coupled socio-environmental systems. Environmental Modelling and Software. 75:317.
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2016.
What every agent-based modeller should know about floating point arithmetic. Environmental Modelling and Software. 21(3):283-309.
.
2006.
Using agent-based models for prediction in complex and wicked systems. Journal of Artificial Societies and Soicial Simulation. 24:ArticleNo.2.
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2021.
Special issue: agent-based modelling of land use effects on ecosystem processes and services. Journal of Land Use Science. 6:75-81.
.
2011.
Modelling systemic change in coupled socio-environmental systems. Environmental Modelling and Software. 75:318-332.
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2016.
Extracting OWL ontologies from agent-based models: a netlogo extension. Journal of Artificial Societies and Social Simulation. 18:15.
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2015.
Nonlinearities in biodiversity incentive schemes: A study using an integrated agent-based and metacommunity model. Environmental Modelling and Software. 45:74-91.
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2013.