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Publications list

Found 5892 results

2016
Van der Linden I, Cottyn B, Uyttendaele M, Vlaemynck G, Heyndrickx M, Maes M, Holden N.  2016.  Microarray-based screening of differentially expressed genes of e. coli O157:H7 sakai during preharvest survival on butterhead lettuce. Agriculture-Basel. 6
Delgado-Baquerizo M, Maestre FT, Reich PB, Jeffries TC, Gaitán JJ, Encinar D, Berdugo M, Campbell CD, Singh BK.  2016.  Microbial diversity drives multifunctionality in terrestrial ecosystems. Nature Communications. 7
Pan FX, Li YY, Chapman SJ, Khan S, Yao HY.  2016.  Microbial utilization of rice straw and its derived biochar in a paddy soil. Science of the Total Environment.
Stutter MI, Cairns J.  2016.  The mineralisation of dissolved organic matter recovered from temperate waterbodies during summer. Aquatic Sciences. 78:447-482.
Simonsson M, Court M, Bergholm J, Lemarchand D, Hillier S.  2016.  Mineralogy and biogeochemistry of potassium in the Skogaby experimental forest, southwest Sweden: pools, fluxes and K/Rb ratios in soil and biomass. Biogeochemistry. Published online..
Thompson CW, Aspinall P, Roe J, Robertson L, Miller DR.  2016.  Mitigating stress and supporting health in deprived urban communities: the importance of green space and the social environment. International Journal of Environmental Research and Public Health. 13:ArticleNo.440.
Phillips WS, Brown AMV, Howe DK, Peetz AB, Blok VC, Denver DR, Zasada IA.  2016.  The mitochondrial genome of Globodera ellingtonae is composed of two circles with segregated gene content and differential copy numbers. BMC Genomics. 17:ArticleNo.706..
Mollon LC, Norton GJ, Trakal L, Moreno-Jimenez E, Elouali FZ, Hough RL, Beesley L.  2016.  Mobility and toxicity of heavy metal(loid)s arising from contaminated wood ash application to a pasture grassland soil. Environmental Pollution. 218:419-427.
Vereecken H, Schnepf A, Hopmans JW, Javaux M, Or D, Roose DOT, Vanderborght J, Young MH, Amelung W, Aitkenhead M et al..  2016.  Modeling soil processes: Review, key challenges, and new perspectives. Vadose Zone Journal. 15
Senapati N, Chabbi A, Giostri AF, Yeluripati JB, Smith P.  2016.  Modelling nitrous oxide emissions from mown-grass and grain-cropping systems: Testing and sensitivity analysis of DailyDayCent using high frequency measurements. Science of the Total Environment. 572:955-977.
Melo PC, Copus A, Coombes M.  2016.  Modelling small area at-risk-of-poverty rates for the UK using the World Bank methodology and the EU-SILC. Applied Spatial Analysis and Policy. 9:97-117.
Polhill JG, Filatova T, Schlüter M, Voinov A.  2016.  Modelling systemic change in coupled socio-environmental systems. Environmental Modelling and Software. 75:318-332.
Polhill JG, Filatova T, Schluter M, Voinov A.  2016.  Modelling systemic change in coupled socio-environmental systems. Environmental Modelling and Software. 75:318-332.
Hopkins M, Finlayson G, Duarte C, Whybrow S, Ritz P, Horgan GW, Blundell JE, Stubbs RJ.  2016.  Modelling the associations between fat-free mass, resting metabolic rate and energy intake in the context of total energy balance. International Journal of Obesity. 40:312-318.
Li S, Gilbert L, Harrison PA, Rounsevell MDA.  2016.  Modelling the seasonality of Lyme disease risk and the potential impacts of a warming climate within the heterogeneous landscapes of Scotland. Journal of the Royal Society Interface. 13:ArticleNo.20160140.
McKenzie BM, Braga RA, Coelho DEC, Krol M, Horgan GW.  2016.  Moire as a low-cost, robust, optical-technique to quantify soil surface condition. Soil and Tillage Research. 158:147-155.
Sahi G, Hedley PP, Morris J, Loake GJ, MacFarlane SA.  2016.  Molecular and biochemical examination of spraing disease in potato tuber in response to Tobacco rattle virus infection. Molecular Plant-Microbe Interactions (MPMI). 29:822-828.
Oliver DM, Hanley ND, van Niekerk M, Kay D, Heathwaite AL, Rabinovici SJM, Kinzelman JL, Fleming LE, Porter J, Shaikh S et al..  2016.  Molecular tools for bathing water assessment in Europe: Balancing social science research with a rapidly developing environmental science evidence-base. Ambio. 45:52-62.
Oliver DM, Hanley ND, van Niekerk M, Kay D, Heathwaite AL, Rabinovici SJM, Kinzelman JL, Fleming LE, Porter J, Shaikh S et al..  2016.  Molecular tools for bathing water assessment in Europe: balancing social science research with a rapidly developing environmental science evidence-base. Ambio. 45:52-62.
de Jesus DS, Oliveira CMG, Roberts D, Blok V, Neilson R, Prior T, Balbino HM, MacKenzie KM, Oliveira RDD.  2016.  Morphological and molecular characterisation of Aphelenchoides besseyi and A. fujianensis (Nematoda: Aphelenchoididae) from rice and forage grass seeds in Brazil. Nematology. 18:337-356.
Yuan HM, Blackwell M, McGrath S, George TS, Granger SH, Hawkins JMB, Dunham S, Shen JB.  2016.  Morphological responses of wheat (Triticum aestivum L.) roots to phosphorus supply in two contrasting soils. Journal of Agricultural Science. 154:98-108.
Tak N, Awasthi E, Bissa G, Meghwal RR, James EK, Sprent JS, Gehlot HS.  2016.  Multi locus sequence analysis and symbiotic characterization of novel Ensifer strains nodulating Tephrosia spp. In the Indian Thar Desert. Systematic and Applied Microbiology. 39:534-545.
Ruane AC, Hudson NI, Asseng S, Camarrano D, Ewert F, Martre P, Boote KJ, Thorburn PJ, Aggarwal PK, Angulo C et al..  2016.  Multi-wheat-model ensemble responses to interannual climate variability. Environmental Modelling and Software. 81:86-101.
Gonzalez-Andres F, James E.  2016.  National meeting of the Spanish Society of Nitrogen Fixation (XV SEFIN). Symbiosis. 67:1-2.
Lamichhane JR, Aubertot JN, Begg G, Birch ANE, Boonekamp P, Dachbrodt-Saaydeh S, Hansen JG, Hovmoller MS, Jensen JE, Jorgensen KLNJ et al..  2016.  Networking of integrated pest management: a powerful approach to address common challenges in agriculture. Crop Protection. 89:139-151.
Helfer G, Ross AW, Thomson LM, Mayer CD, Stoney PN, McCaffery PJ, Morgan PJ.  2016.  A neuroendocrine role for chemerin in hypothalamic remodelling and photoperiodic control of energy balance. Scientific Reports. 6
Johnson SN, Benefer CM, Frew A, Griffiths BS, Hartley SE, Karley AJ, Rasmann S, Schumann M, Sonnemann I, Robert CAM.  2016.  New frontiers in belowground ecology for plant protection from root-feeding insects. Applied Soil Ecology. 108:96-107.
Meijer GJ, Bengough AG, Knappett JA, Loades KW, Nicoll BC.  2016.  New in situ techniques for measuring the properties of root-reinforced soil - laboratory evaluation. Geotechnique. 66:27-40.
Rhee YJ, Hillier S, Gadd GM.  2016.  A new lead hydroxycarbonate produced during transformation of lead metal by the soil fungus Paecilomyces Javanicus. Geomicrobiology Journal. 33:250-260.
Koutsovoulos G, Kumar S, Laetsch DR, Stevens L, Daub J, Conlon C, Maroon H, Thomas F, Aboobaker AA, Blaxter M.  2016.  No evidence for extensive horizontal gene transfer in the genome of the tardigrade Hypsibius dujardini. Proceedings of the National Academy of Sciences of the United States of America. 1135053
Platero R, James EK, Rios C, Iriarte A, Sandes L, Zabaleta M, Battistoni F, Fabiano E.  2016.  Novel Cupriavidus strains isolated from root nodules of native Uruguayan Mimosa species. Applied and Environmental Microbiology. 82:3150-3164.
Multari S, Neacsu M, Scobbie L, Cantlay L, Duncan G, Vaughan N, Stewart D, Russell WR.  2016.  Nutritional and phytochemical content of high-protein crops. Journal of Agricultural and Food Chemistry. 64:7800-7811.
Qian MR, Wu HZ, Wang JM, Zhang H, Zhang ZL, Zhang YZ, Lin H, Ma JW.  2016.  Occurrence of trace elements and antibiotics in manure- based fertilizers from the Zhejiang Province of China. Science of the Total Environment. 559:174-181.
Boevink PC, McLellan H, Gilroy EM, Naqvi S, He Q, Yang LN, Wang XD, Turnbull D, Armstrong MR, Tian ZD et al..  2016.  Oomycetes seek help from the plant: Phytophthora infestans effectors target host susceptibility factors. Molecular Plant. 9:636-638.
Sjogersten S, Caul S, Daniell TJ, Jurd APS, O'Sullivan OS, Stapleton CS, Titman JJ.  2016.  Organic matter chemistry controls greenhouse gas emissions from permafrost peatlands. Soil Biology and Biochemistry. 98:42-53.
Schimmelrnann A, Qi HP, Coplen TB, Brand WA, Fong J, Meier-Augenstein W, Kemp HF, Toman B, Ackermann A, Assonov S et al..  2016.  Organic reference materials for hydrogen, carbon, and nitrogen stable isotope-ratio measurements: caffeines, n-alkanes, fatty acid methyl esters, glycines, L-valines, polyethylenes, and oils. Analytical Chemistry. 88:4294-4302.
Brown I, Martin-Ortega J, Waylen KA, Blackstock KL.  2016.  Participatory scenario planning for developing innovation in community adaptation responses: three contrasting examples from Latin America. Regional Environmental Change. Published online.
Brown I, Martin-Ortega J, Waylen KA, Blackstock KL.  2016.  Participatory scenario planning for developing innovation in community adaptation responses: three contrasting examples from Latin America. Regional Environmental Change. 16:1685-1700.
Norman RA, Worton AJ, Gilbert L.  2016.  Past and future perspectives on mathematical models of tick-borne pathogens. Parasitology. 143:850-859.
Arnold KE, Gilbert L, Gorman HE, Griffiths KJ, Adam A, Nager RG.  2016.  Paternal attractiveness and the effects of differential allocation of parental investment. Animal Behaviour. 113:69-78.
Ehlers MH, Sutherland LA.  2016.  Patterns of attention to renewable energy in the British farming press from 1980 to 2013. Renewable and Sustainable Energy Reviews. 54:959-973.
Liang X, Kierans M, Ceci A, Hillier S, Gadd GM.  2016.  Phosphatase-mediated bioprecipitation of lead by soil fungi. Environmental Microbiology. 18:219-231.
George TS, Hinsinger P, Turner BL.  2016.  Phosphorus in soils and plants - facing phosphorus scarcity. Plant and Soil. 401:1-6.
Pagaling E, Gatica J, Yang K, Cytryn E, Yan T.  2016.  Phylogenetic diversity of ceftriaxone resistance and the presence of extended-spectrum beta-lactamase genes in the culturable soil resistome. Journal of Global Antimicrobial Resistance.
Boevink PC, Wang XD, McLellan H, He Q, Naqvi S, Armstrong MR, Zhang W, Hein I, Gilroy EM, Tian ZD et al..  2016.  A Phytophthora infestans RXLR effector targets plant PP1c isoforms that promote late blight disease. Nature Communications. 7
Houston K, Tucker MR, Chowdhury J, Shirley N, Little A.  2016.  The plant cell wall: a complex and dynamic structure as revealed by the responses of genes under stress conditions. Frontiers in Plant Science. 7
Mitchell C, Brennan RM, Graham J, Karley AJ.  2016.  Plant defense against herbivorous pests: exploiting resistance and tolerance traits for sustainable crop protection. Frontiers in Plant Science. 7
Whybrow S, Stubbs RJ, Johnstone AM, O'Reilly LM, Fuller Z, Livingstone MBE, Horgan GW.  2016.  Plausible self-reported dietary intakes in a residential facility are not necessarily reliable. European Journal of Clinical Nutrition. 70:130-135.
Glibert PM, Wilkerson FP, Dugdale RC, Raven JA, Dupont CL, Leavitt PR, Parker AE, Burkholder JM, Kana TM.  2016.  Pluses and minuses of ammonium and nitrate uptake and assimilation by phytoplankton and implications for productivity and community composition, with emphasis on nitrogen-enriched conditions. Limnology and Oceanography. 61:165-197.
Abdul-Salam Y, Phimister E.  2016.  The politico-economics of electricity planning in developing countries: a case study of Ghana. Energy Policy. 88:299-309.
Abdul-Salam Y, Phimister E.  2016.  The politico-economics of electricity planning in developing countries: a case study of Ghana. Energy Policy. 88:299-309.
Yang LN, McLellan H, Naqvi S, He Q, Boevink PC, Armstrong M, Giuliani LM, Zhang W, Tian ZD, Zhan JS et al..  2016.  Potato NPH3/RPT2-like protein StNRL1, targeted by a phytophthora infestans RXLR effector, is a susceptibility factor. Plant Physiology. 171:645-657.
Mitchell RJ, Hester AJ, Hewison RL, Broome A, Kirby KJ.  2016.  Potential impacts of the loss of Fraxinus excelsior due to ash dieback on woodland vegetation in Great Britain. New Journal of Botany, Published online.. 6
Polhill JG, Filatova T, Schlüter M, Voinov A.  2016.  Preface to the thematic issue on modelling systemic change in coupled socio-environmental systems. Environmental Modelling and Software. 75:317.
Zheng CZ, Voorrips RE, Jansen J, Hackett CA, Ho JL, Bink MCAM.  2016.  Probabilistic multilocus haplotype reconstruction in outcrossing tetraploids. Genetics. 203:119-131.
Mortimer CL, Misawa N, Ducreux L, Campbell R, Bramley PM, Taylor M, Fraser PD.  2016.  Product stability and sequestration mechanisms in Solanum tuberosum engineered to biosynthesize high value ketocarotenoids. Plant Biotechnology Journal. 14:140-152.
Tur JN, Copus A.  2016.  A proposal for classification of non-urban regions in the European Union. Cuadernos Geograficos. 55:92-124.
Nisbet AJ, McNeilly TN, Greer AW, Bartley Y, Oliver EM, Smith S, Palarea-Albaladejo J, Matthews JB.  2016.  Protection of ewes against Teladorsagia circumcincta infection in the periparturient period by vaccination with recombinant antigens. Veterinary Parasitology. 228:130-136.
Donald KJ, Clarke HV, Mitchell C, Cornwell RM, Hubbard SF, Karley AJ.  2016.  Protection of pea aphids associated with coinfecting bacterial symbionts persists during superparasitism by a braconid wasp. Microbial Ecology. 71:1-4.
Zhang Y, Thomas CL, Xiang JX, Long Y, Wang XH, Zou J, Luo ZL, Ding GD, Cai HM, Graham NS et al..  2016.  QTL meta-analysis of root traits in Brassica napus under contrasting phosphorus supply in two growth systems. Scientific Reports. 6
Ermgassen PSEZ, Grabowski JH, Gair JR, Powers SP.  2016.  Quantifying fish and mobile invertebrate production from a threatened nursery habitat. Journal of Applied Ecology. 53:596-606.
Harrison PJ, Yuan Y, Buckland ST, Oedekoven CS, Elston DA, Brewer MJ, Johnston A, Pearce-Higgins JW.  2016.  Quantifying turnover in biodiversity of British breeding birds. Journal of Applied Ecology. 53:469-478.
Archer NAL, Otten W, Schmidt S, Bengough AG, Shah N, Bonell M.  2016.  Rainfall infiltration and soil hydrological characteristics below ancient forest, planted forest and grassland in a temperate climate. Ecohydrology. 9:585-600.
Burgess STG, Nunn F, Nath M, Frew D, Wells B, Marr EJ, Huntley JF, McNeilly TN, Nisbet AJ.  2016.  A recombinant subunit vaccine for the control of ovine psoroptic mange (sheep scab). Veterinary Research. 47
Filatova T, Polhill JG, van Ewijk S.  2016.  Regime shifts in coupled socio-environmental systems: review of modelling challenges and approaches. Environmental Modelling and Software. 75:333-347.
Edwards AC, Sinclair AH, Coull MC, Crooks W, Rees RM, Lumsdon DG.  2016.  Regional trends in Scottish advisory soil acidity and phosphorus results: significance of management history, land use and soil attributes. Soil Use and Management. 32:44-53.
Lumsdon DG, Shand CA, Wendler R, Edwards AC, Stutter MI, Richards S, Sinclair AH.  2016.  The relationship between water extractable P and modified Morgan P: results based on data and chemical modelling. Soil Use and Management. 32:162-171.
Lumsdon DG, Shand CA, Wendler R, Edwards AC, Stutter MI, Richards S, Sinclair AH.  2016.  The relationship between water-soluble P and modified Morgan P: results based on data and chemical modelling. Soil Use and Management. 32:162-171.
Mitchell RJ, Urpeth HM, Britton AJ, Black HIJ, Taylor AR.  2016.  Relative importance of local- and large-scale drivers of alpine soil microarthropod communities. Oecologia. 182:913-924.
Brierley JL, Hilton AJ, Wale SJ, Woodhall JW, Lees AK.  2016.  The relative importance of seed- and soil-borne inoculum of Rhizoctonia solani AG-3 in causing black scurf on potato. Potato Research. 59:181-193.
Brewer MJ, Butler A, Cooksley SL.  2016.  The relative performance of AIC, AIC(C) and BIC in the presence of unobserved heterogeneity. Methods in Ecology and Evolution.
Douglas DJT, Buchanan GM, Thompson P, Smith T, Cole T, Amar A, Fielding DA, Redpath SM, Wilson JD.  2016.  Reply to comment on: Vegetation burning for game management in the UK uplands is increasing and overlaps spatially with soil carbon and protected areas. Biological Conservation. 195:295-296.
Finney DL, Doherty RM, Wild O, Young PJ, Butler A.  2016.  Response of lightning NOx emissions and ozone production to climate change: Insights from the Atmospheric Chemistry and Climate Model Intercomparison Project. Geophysical Research Letters. 43:5492-5500.
Hoskin SO, Bremner DM, Holtrop G, Lobley GE.  2016.  Responses in whole-body amino acid kinetics to an acute, sub-clinical endotoxin challenge in lambs. British Journal of Nutrition. 115:576-584.
Eigenbrode SD, Birch ANE, Lindzey S, Meadow R, Snyder WE.  2016.  Review: A mechanistic framework to improve understanding and applications of push-pull systems in pest management. Journal of Applied Ecology. 53:202-212.
Mitra S, Mukherjee A, Wiley-Kalil A, Das S, Owen H, Reddy PM, Ane JM, James EK, Gyaneshwar P.  2016.  A rhamnose-deficient lipopolysaccharide mutant of Rhizobium sp. IRBG74 is defective in root colonization and beneficial interactions with its flooding-tolerant hosts Sesbania cannabina and wetland rice. Journal of Experimental Botany. 67:5869-5884.
Barauna AC, Rouws LFM, Simoes-Araujo JL, Dos Reis Junior FB, Iannetta PPM, Maluk M, Goi SR, Reis VM, James EK, Zilli JE.  2016.  Rhizobium altiplani sp. nov. isolated from effective nodules on Mimosa pudica growing in untypically alkaline soil in Central Brazil. International Journal of Systematic and Evolutionary Microbiology. 66:1-7.
Churchman J, Pasbakhsh P, Hillier S.  2016.  The rise and rise of halloysite. Clay Minerals. 51:303-308.
Hunter LJR, Brockington SF, Murphy AM, Pate AE, Gruden K, MacFarlane SA, Palukaitis P, Carr JP.  2016.  RNA-dependent RNA polymerase 1 in potato (Solanum tuberosum) and its relationship to other plant RNA-dependent RNA polymerases. Scientific Reports. 6
Mitra S, Mukherjee A, Wiley-Kalil A, Das S, Owen H, Reddy PM, Ane JM, James EK, Gyaneshwar P.  2016.  Role of lipopolysaccharide and biofilm formation during endophytic colonization of rice (Oryza sativa L.) and nodulation of Sesbania cannabina by Rhizodium sp. IRBG74. Journal of Experimental Botany. 67:5869-5884.
Auffret MD, Karhu K, Khachane A, Dungait JAJ, Fraser F, Hopkins DW, Wookey PA, Singh BK, Freitag TE, Hartley IP et al..  2016.  The role of microbial community composition in controlling soil respiration responses to temperature. PLoS One. 11:e1065448.
Young JC, Searle K, Butler A, Simmons P, Watt AD, Jordan A.  2016.  The role of trust in the resolution of conservation conflicts. Biological Conservation. 195:196-202.
Bengough AG, Loades KW, McKenzie BM.  2016.  Root hairs aid soil penetration by anchoring the root surface to pore walls. Journal of Experimental Botany. 67:1071-1078.
McKenzie SW, Johnson SN, Jones TH, Ostle NJ, Hails RS, Vanbergen AJ.  2016.  Root herbivores drive changes to plant primary chemistry, but root loss is mitigated under elevated atmospheric CO2. Frontiers in Plant Science. 7
Thomas CL, Alcock TD, Graham NS, Hayden R, Matterson S, Wilson L, Young SD, Dupuy LX, White PJ, Hammond JP et al..  2016.  Root morphology and seed and leaf ionomic traits in a Brassica napus L. diversity panel show wide phenotypic variation and are characteristic of crop habit. BMC Plant Biology.. 16
Kumar M, Wightman R, Atanassov I, Gupta A, Hurst CH, Hemsley PA, Turner S.  2016.  S-acylation of the cellulose synthase complex is essential for its plasma membrane localization. Science. 353:166-169.
McDougall GJ, Austin C, van Schayk E, Martin P.  2016.  Salal (Gaultheria shallon) and aronia (Aronia melanocarpa) fruits from Orkney: phenolic content, composition and effect of wine making. Food Chemistry. 205:239-247.
Campetella G, Canullo R, Gimona A, Garadnai J, Chiarucci A, Giorgini D, Angelini E, Cervellini M, Chelli S, Bartha S.  2016.  Scale-dependent effects of coppicing on the species pool of late successional beech forests in the central Apennines, Italy. Applied Vegetation Science. 19:474-485.
Borjesson G, Menichetti L, Thornton B, Campbell CD, Katterer T.  2016.  Seasonal dynamics of the soil microbial community: assimilation of old and young carbon sources in a long-term field experiment as revealed by natural C-13 abundance. European Journal of Soil Science. 67:79-89.
Thomas-Sharma S, Abdurahman A, Ali S, Andrade-Piedra JL, Bao S, Charkowski AO, Crooke D, Kadian M, Kromann P, Struik PC et al..  2016.  Seed degeneration in potato: the need for an integrated seed health strategy to mitigate the problem in developing countries. Plant Pathology. 65:3-16.
White PJ.  2016.  Selenium accumulation by plants. Annals of Botany. 117:217-235.
Richards S, Paterson E, Withers PJA, Stutter MI.  2016.  Septic tank discharges as multi-pollutant hotspots in catchments. Science of the Total Environment. 542:854-863.
Callaby R, Toye P, Jennings A, Thumbi SM, Coetzer JAW, Van Wyk ICC, Hanotte O, Mbole-Kariuki MN, Bronsvoort BMD, Kruuk LEB et al..  2016.  Seroprevalence of respiratory viral pathogens of indigenous calves in Western Kenya. Research in Veterinary Science. 108:120-124.
Beerman A, Ashe E, Preedy K, Williams R.  2016.  Sexual segregation when foraging in an extremely social killer whale population. Behavioral Ecology and Sociobiology. 70:189-198.
Ross LC, Austrheim G, Asheim LJ, Bjarnason G, Feilberg J, Fosaa AM, Hester AJ, Holand O, Jonsdottir IS, Mortensen LE et al..  2016.  Sheep grazing in the North Atlantic region: A long-term perspective on environmental sustainability. Ambio. 45:551-566.
Mora F, Quitral YA, Matus I, Russell J, Waugh R, del Pozo A.  2016.  SNP-based QTL mapping of 15 complex traits in barley under rain-fed and well-watered conditions by a mixed modeling approach. Frontiers in Plant Science. 7
Dahlin AS, Eriksson J, Campbell CD, Oborn I.  2016.  Soil amendment affects Cd uptake by wheat - are we underestimating the risks from chloride inputs? Science of the Total Environment. 554:349-357.
Beckert MR, Smith P, Lilly A, Chapman SJ.  2016.  Soil and tree biomass carbon sequestration potential of silvopastoral and woodland pasture systems in North East Scotland. Agroforestry Systems. 90:371-383.
Hopkins DW, Wheatley RE, Coakley CM, Daniell TJ, Mitchell SM, Newton AC, Neilson R.  2016.  Soil carbon and nitrogen and barley yield responses to repeated additions of compost and slurry. Journal of Agricultural Science. Published online..
Habtom H, Demaneche S, Dawson LA, Azulay C, Matan O, Robe P, Gafny R, Simonet P, Jurkevitch E, Pasternak Z.  2016.  Soil characterisation by bacterial community analysis for forensic applications: a quantitative comparison of environmental technologies. Forensic Science International. 26:21-29.
Li YY, Wang J, Pan FX, Chapman SJ, Yao HY.  2016.  Soil nitrogen availability alters rhizodeposition carbon flux into the soil microbial community. Journal of Soils and Sediments. 16:1472-1480.
Cheng YH, Jiang Y, Wu Y, Valentine TA, Li HX.  2016.  Soil nitrogen status modifies rice root response to nematode-bacteria interactions in the rhizosphere. PLoS ONE. 11
Melo LCA, Puga AP, Coscione AR, Beesley L, Abreu CA, Camargo OA.  2016.  Sorption and desorption of cadmium and zinc in two tropical soils amended with sugarcane-straw-derived biochar. Journal of Soils and Sediments. 16:226-234.
Skelsey P, Elphinstone JG, Saddler GS, Wale SJ, Toth IK.  2016.  Spatial analysis of blackleg-affected seed potato crops in Scotland. Plant Pathology. 65:570-576.
Gonzalez J, Luque S, Poggio L, Smith R, Gimona A.  2016.  Spatial Bayesian belief networks as a planning decision tool for mapping ecosystem services trade-offs on multifunctional forested landscapes. Environmental Research. 144:15-26.
van Bussel LGJ, Ewert F, Zhao G, Hoffmann H, Enders A, Wallach D, Asseng S, Baigorria GA, Basso B, Biernath C et al..  2016.  Spatial sampling of weather data for regional crop yield simulations. Agricultural and Forest Meteorology. 220:101-115.
Peukert S, Griffith BA, Murray PJ, Macleod CJA, Brazier RE.  2016.  Spatial variation in soil properties and diffuse losses between and within grassland fields with similar short-term management. European Journal of Soil Science. 67:386-396.
Sample JE, Baber I, Badger R.  2016.  A spatially distributed risk screening tool to assess climate and land use change impacts on water-related ecosystem services. Environmental Modelling and Software. 83:12-26.
Colas I, Macaulay M, Higgins JD, Phillips D, Barakate A, Posch M, Armstrong SJ, Franklin FCH, Halpin C, Waugh R et al..  2016.  A spontaneous mutation in MutL-Homolog 3 (HvMLH3) affects synapsis and crossover resolution in the barley desynaptic mutant des10. New Phytologist. 212:693-707.
Bailey M, Srivastava A, Conti L, Nelis S, Zhang CJ, Florance H, Love A, Milner J, Napier R, Grant M et al..  2016.  Stability of small ubiquitin-like modifier (SUMO) proteases OVERLY TOLERANT TO SALT1 and-2 modulates salicylic acid signalling and SUMO1/2 conjugation in Arabidopsis thaliana. Journal of Experimental Botany. 67:353-363.
Tilsner J, Nicolas W, Rosado A, Bayer EM.  2016.  Staying tight: Plasmodesmal membrane contact sites and the control of cell-to-cell connectivity in plants. Annual Review of Plant Biology.
Tilsner J, Nicolas W, Rosado A, Bayer EM.  2016.  Staying tight: Plasmodesmal membrane contact sites and the control of cell-to-cell connectivity in plants. Annual Review of Plant Biology. 67:337-364.
Perez-Sancho J, Tilsner J, Samuels AL, Botella MA, Bayer EM, Rosado A.  2016.  Stitching organelles: organization and function of specialized membrane contact sites in plants. Trends in Cell Biology. 26:705-717.
Austrheim G, Speed JDM, Evju M, Hester AJ, Holand O, Loe LE, Martinsen V, Mobaek R, Mulder SJH, Thompson DBA et al..  2016.  Synergies and trade-offs between ecosystem services in an alpine ecosystem grazed by sheep - an experimental approach. Basic and Applied Ecology. 17:596-608.
Duckett D, Feliciano D, Martin-Ortega J, Munoz-Rojas J.  2016.  Tackling wicked environmental problems: The discourse and its influence on practice in Scotland. Landscape and Urban Planning. Published online..
Duckett D, Feliciano D, Martin-Ortega J, Munoz-Rojas J.  2016.  Tackling wicked environmental problems: The discourse and its influence on practice in Scotland. Landscape and Urban Planning. 154:44-56.
O'Gorman EJ, Olafsson OP, Demars BOL, Friberg N, Gudbergsson G, Hannesdottir ER, Jackson MC, Johansson LS, McLaughlin OB, Olafsson JS et al..  2016.  Temperature effects on fish production across a natural thermal gradient. Global Change Biology. 22:3206-3220.
Richards S, Withers PJA, Paterson E, McRoberts CW, Stutter MI.  2016.  Temporal variability in domestic point source discharges and their associated impact on receiving waters. Science of the Total Environment. 571:1275-1283.
Stocker BD, Prentice IC, Cornell SE, Davies-Barnard T, Finzi AC, Franklin O, Janssens I, Larmola T, Manzoni S, Nasholm T et al..  2016.  Terrestrial nitrogen cycling in earth system models revisited. New Phytologist. 210:1165-1168.
Sherwood P, Bonello P.  2016.  Testing the systemic induced resistance hypothesis with Austrian pine and Diplodia sapinea. Physiological and Molecular Plant Pathology. 94:118-125.
Sang N, Gold C, Miller DR.  2016.  The topological viewshed; embedding topological pointers into digital terrain models to improve GIS capability for visual landscape analysis. International Journal of Digital Earth. 9:1185-1205.
Creaney R, Niewiamdomski P.  2016.  Tourism and sustainable development on the Isle of Eigg, Scotland. Scottish Geographical Journal. Published online..
Creaney R, Niewiamdomski P.  2016.  Tourism and sustainable development on the Isle of Eigg, Scotland. Scottish Geographical Journal. 132:210-233.
Basso B, Giola P, Dumont B, Migliorati MD, Cammarano D, Pruneddu G, Giunta F.  2016.  Tradeoffs between maize silage yield and nitrate leaching in a Mediterranean nitrate-vulnerable zone under current and projected climate scenarios. PLoS ONE. 11:e0146360.
Tsai IJ, Tanaka R, Kanzaki N, Akiba M, Yokoi T, Espada M, Jones JT, Kikuchi T.  2016.  Transcriptional and morphological changes in the transition from mycetophagous to phytophagous phase in the plant-parasitic nematode Bursaphelenchus xylophilus. Molecular Plant Pathology. 17:77-83.
Jager NW, Challies E, Kochskämper E, Newig J, Benson D, Blackstock KL, Collins K, Ernst A, Evers M, Feichtinger J et al..  2016.  Transforming European water governance? EU water framework directive implementation in 13 member states Water. :ArticleNo.156.
Snell HSK, Robinson D, Midwood AJ.  2016.  Tree species' influences on soil carbon dynamics revealed with natural abundance C-13 techniques. Plant and Soil. 400:285-296.
Velmurugan J, Mollison E, Barth S, Marshall D, Milne L, Creevey CJ, Lynch B, Meally H, McCabe M, Milbourne D.  2016.  An ultra-high density genetic linkage map of perennial ryegrass (Lolium perenne) using genotyping by sequencing (GBS) based on a reference shotgun genome assembly. Annals of Botany. 118:71-87.
Cammarano D, Rotter RP, Asseng S, Ewert F, Wallach D, Martre P, Hatfield JL, Jones JW, Rosenzweig C, Ruane AC et al..  2016.  Uncertainty of wheat water use: Simulated patterns and sensitivity to temperature and CO2. Field Crops Research. 198:80-92.
Lu YW, Yin MY, Wang XD, Chen BH, Yang X, Peng JJ, Zheng HY, Zhao JP, Lin L, Yu CL et al..  2016.  The unfolded protein response and programmed cell death are induced by expression of garlic virus X p11 in Nicotiana benthamiana. Journal of General Virology. 97:1462-1468.
Pett TJ, Shwartz A, Irvine KN, Dallimer M, Davies ZG.  2016.  Unpacking the people - biodiversity paradox: a conceptual framework. Bioscience. 66:576-583.
Powell JR, Bennett AE.  2016.  Unpredictable assembly of arbuscular mycorrhizal fungal communities. Pedobiologia. 59:11-15.
Rydevik G, Innocent GT, Marion G, Davidson RS, White PCL, Billinis C, Barrow P, Mertens PPC, Gavier-Widen D, Hutchings MR.  2016.  Using combined diagnostic test results to hindcast trends of infection from cross-sectional data. PLoS Computational Biology. 12:ArticleNo.e1004901.
Rydevik G, Innocent GT, Marion G, Davidson RS, White PCL, Billinis C, Barrow P, Mertens PPC, Gavier-Widen D, Hutchings MR.  2016.  Using combined diagnostic test results to hindcast trends of infection from cross-sectional data. PLOS Computational Biology.. 12
Cammarano D, Zierden D, Stefanova L, Asseng S, O'Brien JJ, Jones JW.  2016.  Using historical climate observations to understand future climate change crop yield impacts in the Southeastern US. Climatic Change. 134:311-326.
Prager K, Curfs M.  2016.  Using mental models to understand soil management. Soil Use and Management.
Prager K, Curfs M.  2016.  Using mental models to understand soil management. Soil Use and Management. 32:36-44.
Stone D, Costa D, Daniell TJ, Mitchell SM, Topp CFE, Griffiths BS.  2016.  Using nematode communities to test a European scale soil biological monitoring programme for policy development. Applied Soil Ecology. 97:78-85.
Van Weymers PSM, Baker K, Chen XW, Harrower B, Cooke DEL, Gilroy EM, Birch PRJ, Thilliez GJA, Lees AK, Lynott JS et al..  2016.  Utilizing 'Omic' technologies to identify and prioritize novel sources of resistance to the oomycete pathogen Phytophthora infestans in potato germplasm collections. Frontiers in Plant Science. 7
Basso B, Fiorentino C, Cammarano D, Schulthess U.  2016.  Variable rate nitrogen fertilizer response in wheat using remote sensing. Precision Agriculture. 17:168-182.
Wang JM, Lin H, Sun WC, Xia Y, Ma JW, Fu JR, Zhang ZL, Wu HZ, Qian MR.  2016.  Variations in the fate and biological effects of sulfamethoxazole, norfloxacin and doxycycline in different vegetable-soil systems following manure application. Journal of Hazardous Materials, 304, 49-57..
McBean D, Nath M, Lambe N, Morgan-Davies C, Kenyon F.  2016.  Viability of the Happy Factor (TM) targeted selective treatment approach on several sheep farms in Scotland. Veterinary Parasitology. 218:22-30.
Wang C, Miller DR, Brown I, Jiang Y, Castellazzi M.  2016.  Visualisation techniques to support public interpretation of future climate change and land use choices: a case study from N-E Scotland. International Journal of Digital Earth. 9:586-605.
Wang C, Miller D, Brown I, Jiang Y, Castellazzi M.  2016.  Visualisation techniques to support public interpretation of future climate change and land use choices: a case study from NE Scotland. International Journal of Digital Earth. Published online..
McNeil CJ, Hoskin SO, Bremner DM, Holtrop G, Lobley GE.  2016.  Whole-body and splanchnic amino acid metabolism in sheep during an acute endotoxin challenge. British Journal of Nutrition. 116:211-222.
Crozier L, Hedley PE, Morris J, Wagstaff C, Andrews SC, Toth I, Jackson RW, Holden N.  2016.  Whole-transcriptome analysis of verocytotoxigenic Escherichia coli O157:H7 (Sakai) suggests plant-species-specific metabolic responses on exposure to spinach and lettuce extracts. Frontiers in Microbiology. 7
Li S, Gilbert L, Harrison PA, Rounsevell MDA.  2016.  yy Modelling the seasonality of Lyme disease risk and the potential impacts of a warming climate within the heterogeneous landscapes of Scotland. Journal of the Royal Society Interface. 13:ArticleNo.20160140.
2015
Macedo D, Tavares L, McDougall GJ, Miranda HV, Stewart D, Ferreira RB, Tenreiro S, Outeiro TF, Santos CN.  2015.  (Poly)phenols protect from alpha-synuclein toxicity by reducing oxidative stress and promoting autophagy. Human Molecular Genetics. 24:1717-1732.
Flynn KJ, St John M, Raven JA, Skibinski DOF, Allen JI, Mitra A, Hofmann EE.  2015.  Acclimation, adaptation, traits and trade-offs in plankton functional type models: reconciling terminology for biology and modelling. Journal of Plankton Research. 37:683-691.
Huang Y, Long X, Chapman SJ, Yao HY.  2015.  Acidophilic denitrifiers dominate the N2O production in a 100-year-old tea orchard soil. Environmental Science and Pollution Research. 22:4173-4182.
Sarkki S, Tinch R, Niemelä J, Heink U, Waylen KA, Timaeus J, Young JC, Watt AD, Neßhöver C, Van Den Hove S.  2015.  Adding ‘iterativity’ to the credibility, relevance, legitimacy: A novel scheme to highlight dynamic aspects of science-policy interfaces. Environmental Science and Policy. 54:505-512.
Warber SL, DeHudy AA, Bialko MF, Marselle MR, Irvine KN.  2015.  Addressing "nature-deficit disorder": a mixed methods pilot study of young adults attending a wilderness camp. Evidence based Complimentary and Alternative Medicine. Article No. 651827
Adams JL, Tipping E, Bryant CL, Helliwell RC, Toberman H, Quinton J.  2015.  Aged riverine particulate organic carbon in four UK catchments. Science of the Total Environment. 536:648-654.
Sanchez-Marono N, Alonso-Betanzos A, Fontenla-Romero O, Brinquis-Nunez C, Polhill JG, Craig T, Dumitru A, Garcia-Mira R.  2015.  An agent-based model for simulating environmental behavior in an educational organization. Neural Processing Letters. 42:89-118.
Prager K.  2015.  Agri-environmental collaboratives as bridging organisations in landscape management. Journal of Environmental Management. 161:375-384.
Prager K.  2015.  Agri-environmental collaboratives for landscape management in Europe. Current Opinion in Environmental Sustainability. 12:59-66.
Harding AE, Rivington M, Mineter MJ, Tett SFB.  2015.  Agro-meteorological indices and climate model uncertainty over the UK. Climatic Change. 128:113-126.
Knierim A, Boenning K, Caggiano M, Cristóvão A, Dirimanova V, Koehnen T, Labarthe P, Prager K.  2015.  The AKIS concept and its relevance in selected EU member states. Outlook on Agriculture.
Shin KH, Yang SH, Lee JY, Lim CW, Lee SC, Brown JWS, Kim SH.  2015.  Alternative splicing of mini-exons in the Arabidopsis leaf rust receptor-like kinase LRK10 genes affects subcellular localisation. Plant Cell Reports. 34:495-505.
Sarkies P, Selkirk ME, Jones JT, Blok VC, Boothby T, Goldstein B, Hanelt B, Ardila-Garcia A, Fast NM, Schiffer PM et al..  2015.  Ancient and novel small RNA pathways compensate for the loss of piRNAs in multiple independent nematode lineages. PLoS Biology. 13:e1002061.
Ferreira LMM, Celaya R, Santos AS, Mayes RW, Rodrigues MAM, Osoro K.  2015.  Application of long-chain alcohols as diet-composition markers in sheep fed on grass-white clover and heather-gorse plant species. Grass and Forage Science. 70:30-43.
Fray RG, Simpson GG.  2015.  The Arabidopsis epitranscriptome. Current Opinion in Plant Biology. 27:17-21.
Brown JL, MacDonald R, Mitchell R.  2015.  Are people who participate in cultural activities more satisfied with life? Social Indicators Research. 122:135-146.
Ramezanian A, Dahlin AS, Campbell CD, Hillier S, Oborn I.  2015.  Assessing biogas digestate, pot ale, wood ash and rockdust as soil amendments: effects on soil chemistry and microbial community composition. Acta Agriculturae Scandinavica, Section B: Soil and Plant Science.
Lilly A, Chapman SJ.  2015.  Assessing changes in carbon stocks of Scottish soils: lessons learnt. Earth and Environmental Science. 25:ArticleNo.01201.
Travis AJ, Norton GJ, Datta S, Sarma R, Dasgupta T, Savio FL, Macaulay M, Hedley PE, McNally KL, Sumon MH et al..  2015.  Assessing the genetic diversity of rice originating from Bangladesh, Assam and West Bengal. Rice. 8
Grant DM, Dagleish MP, Bachofen C, Boag B, Deane D, Percival A, Zadoks RN, Russell GC.  2015.  Assessment of the rabbit as a wildlife reservoir of bovine viral diarrhea virus: serological analysis and generation of trans-placentally infected offspring. Frontiers in Microbiology. 6
Herfindal I, Tremblay JP, Hester AJ, Lande US, Wam HK.  2015.  Associational relationships at multiple spatial scales affect forest damage by moose. Forest Ecology and Management. 348:97-107.
Zhang RX, Calixto CPG, Tzioutziou NA, James AB, Simpson CG, Guo WB, Marquez Y, Kalyna M, Patro R, Eyras E et al..  2015.  AtRTD - a comprehensive reference transcript dataset resource for accurate quantification of transcript-specific expression in Arabidopsis thaliana. New Phytologist. 208:96-101.
Horgan GW, Song Y, Glasbey CA, van der Heijden GWAM, Polder G, Dieleman JA, Bink MCAM, van Eeuwijk FA.  2015.  Automated estimation of leaf area development in sweet pepper plants from image analysis. Functional Plant Biology. 42:486-492.
Rossez Y, Wolfson EB, Holmes A, Gally DL, Holden NJ.  2015.  Bacterial flagella: twist and stick, or dodge across the Kingdoms. PLoS Pathogens.. 11:e1004483.
Dawson IK, Russell J, Powell W, Steffenson B, Thomas WTB, Waugh R.  2015.  Barley: a translational model for adaptation to climate change. New Phytologist. 206:913-931.
Martin-Fernandez JA, Hron K, Templ M, Filzmoser P, Palarea-Albaladejo J.  2015.  Bayesian-multiplicative treatment of count zeros in compositional data sets. Central European Journal of Biology. 15:134-158.
Sarkki S, Ficko AJ, Grunewald K, Nijnik M.  2015.  Benefits from and threats to European treeline ecosystem services: an exploratory study of stakeholders and governance. Regional Environmental Change. Published online.
Puga AP, Abreu CA, Melo LCA, Beesley L.  2015.  Biochar application to a contaminated soil reduces the availability and plant uptake of zinc, lead and cadmium. Journal of Environmental Management. 159:86-93.
Evans DM, Altwegg R, Garner TWJ, Gompper ME, Gordon IJ, Johnson JA, Pettorelli N.  2015.  Biodiversity offsetting: what are the challenges, opportunities and research priorities for animal conservation? Animal Conservation. 18:1-3.
Harrison K, Hoad G, Scott P, Simpson L, Horgan GW, Smyth E, Heys SD, Haggarty P.  2015.  Breast cancer risk and imprinting methylation in blood. Clinical Epigenetics. 7:ArticleNo.92.
Sheu SY, Chen MH, Liu WYY, Andrews M, James EK, Ardley JK, De Meyer SE, James TK, Howieson JG, Coutinho BG et al..  2015.  Burkholderia dipogonis sp. Nov., isolated from root nodules of Dipogon lignosus in New Zealand and Western Australia. International Journal of Systematic and Evolutionary Microbiology. 65:4716-4723.
Flanigan S, Sutherland LA.  2015.  Buying access to social capital? From collaboration to service provision in an agricultural co-operative Sociologia Ruralis. Published online.
Yao HY, Chapman SJ, Thornton B, Paterson E.  2015.  C-13 PLFAs: a key to open the soil microbial black box? Plant and Soil. 392:3-15.
Puga AP, Abreu CA, Melo LCA, Paz-Ferreiro J, Beesley L.  2015.  Cadmium, lead, and zinc mobility and plant uptake in a mine soil amended with sugarcane straw biochar. Environmental Science and Pollution Research. 22:17606-17614.
Wiesel L, Dubchak S, Turnau K, Broadley MR, White PJ.  2015.  Caesium inhibits the colonization of Medicago truncatula by arbuscular mycorrhizal fungi. Journal of Environmental Radioactivity. 141:57-61.

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The James Hutton Research Institute is the result of the merger in April 2011 of MLURI and SCRI. This merger formed a new powerhouse for research into food, land use, and climate change.