Publications list
Initial results from a long-term, multi-site field study of the effects on soil fertility and microbial activity of sludge cakes containing heavy metals. Soil Use and Management. 22(1):11-21.
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2006.
Sequence and characterization of six mitochondrial subgenomes from Globodera rostochiensis: multipartite structure is conserved amongst close nematode relatives. Journal of Molecular Evolution. 65:308-315. Abstract
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2007.
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2016.
The mitochondrial subgenomes of the nematode Globodera pallida are mosaics: Evidence of recombination in an animal mitochondrial genome. Journal of Molecular Evolution. 64:463-471. Abstract
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2007.
Plant-plant communication through common mycorrhizal networks. Advances in Botanical Research. 82:83-97.
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2017.
Environmental risk factors for Ixodes ricinus ticks and their infestation on lambs in a changing ecosystem: Implications for tick control and the impact of woodland encroachment on tick-borne disease in livestock. Agriculture Ecosystems and Environment. 237:265-273.
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2017.
Are rural residents happier? A quantitative analysis of subjective wellbeing in Scotland Journal of Rural Studies. 44:37-45.
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2016.
Male attractiveness regulates daughter fecundity non-genetically via maternal investment. Proceedings of the Royal Society of London, B.. 279:523-528.
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2012.
Plant-mediated 'apparent effects' between mycorrhiza and insect herbivores. Current Opinion in Plant Biology. 26:100-105.
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2015.
Climate of origin affects tick (Ixodes ricinus) host-seeking behavior in response to temperature: implications for resilience to climate change? Ecology and Evolution. 4:1186-1198.
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2014.
Louping ill virus in the UK: a review of the hosts, transmission and ecological consequences of control. Experimental and Applied Acarology. 68:363-374.
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2016.
Can restoration of afforested peatland regulate pests and disease? Journal of Applied Ecology. 50:1226-1233.
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2013.
Yolk androgens and embryo sex: maternal effects of confounding factors? Hormones and Behavior. 51(2):231-238.
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2007.
The effect of deer management on the abundance of Ixodes ricinus in Scotland. Ecological Applications. 22:658-667.
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2012.
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2010.
Maternal effects due to male attractiveness affect offspring development in the zebra finch. Proceedings of the Royal Society of London, B. 273(1595):1765-1771.
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2006.
Workplace settings and wellbeing: Greenspace use and views contribute to employee wellbeing at peri-urban business sites. Landscape and Urban Planning. 138:32-40.
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2015.
Soil nitrate reducing processes - drivers, mechanisms for spatial variation, and significance for nitrous oxide production. Frontiers in Microbiology. 3:407.
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2012.
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2018.
Root development impacts on the distribution of phosphatase activity: Improvements in quantification using soil zymography. Soil Biology and Biochemistry. 116:158-166.
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2018.
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2017.
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2017.
Compound driven differences in N2 and N2O emission from soil; the role of substrate use efficiency and the microbial community. Soil Biology and Biochemistry.. 106:90-98.
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2017.
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2017.
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2017.
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2016.
The role of gluconate production by Pseudomonas spp. in the mineralization and bioavailability of calcium-phytate to Nicotiana tabacum. Canadian Journal of Microbiology. 61:885-897.
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2015.
First 20 years of DNDC: model evolution. Ecological Modelling. 292:51-62.
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2014.
What’s missing from legal geography and materialist studies of law? Absence and the assembling of asylum hearings in Europe Transactions of the Institute of British Geographers.
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2020.
25 years of protest: migration control and the power of local activism. Geography. 104:134-140.
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2019.
The tribunal atmosphere: On qualitative barriers to access to justice. Geoforum. 119:61-71.
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2021.
Profiling of phenols in human faecal water after raspberry supplementation. Journal of Agricultural and Food Chemistry. 58:10389-10395.
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2010.
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2011.
Involvement of cathepsin B in the plant disease resistance hypersensitive response. Plant Journal. 52:1-13. Abstract
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2007.
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2011.
Global Research Alliance N2O chamber methodology guidelines: Summary of modeling approaches. Journal of Environmental Quality. 49:1168-1185.
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2020.
Mapping hotspots in landscape functionality; a case study on farmland afforestation in Scotland. Landscape Ecology. 22(8):1255-1264.
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2007.
Local environmental effects and spatial effects in macroecological studies using mapped abundance classes: the case of the rook Corvus frugilegus in Scotland. Journal of Animal Ecology. 75(5):1140-1146.
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2006.
Exploring robustness of biodiversity policy with a coupled metacommunity and agent-based model. Journal of Land Use Science. 6:175-193.
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2011.
Scaling up of a mechanistic dynamic model in a GIS environment to assess temperate grassland production at the regional scale. Grass and Forage Science. 61(3):315-331.
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2006.
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2015.
Woodland networks in a changing climate: Threats from land use change. Biological Conservation. 149:93-102.
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2012.
CORINE-based landscape indices weakly correlate with plant species richness in a northern European landscape transect. Landscape Ecology. 24(1):53-64.
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2009.
The effect of image compression on synthetic PROBA-V images. International Journal of Remote Sensing. 35:2639-2653.
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2014.
A GIS-based tool for an integrated assessment of spatial planning trade-offs with aquaculture. Science of the Total Environment. 627:1644-1655.
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2018.
A GIS-based tool for an integrated assessment of spatial planning trade-offs with aquaculture. Science of the Total Environment. Published online.
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2018.
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2014.
Physiological responses of the green alga Dunaliella parva (Volvocales, Chlorophyta) to controlled incremental changes in the N source. Functional Plant Biology. 34:925-934. Abstract
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2007.
Nitrogen and sulfur assimilation in plants and algae. Aquatic Botany. 118:45-61.
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2014.
A tale of two eras: Phytoplankton composition influenced by oceanic paleochemistry. Geobiology. 16:498-506.
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2018.
Growth rate hypothesis and efficiency of protein synthesis under different sulphate concentrations in two green algae. Plant Cell and Environment. 38:2313-2317.
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2015.
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2021.
CO2 concentrating mechanisms in algae: mechanisms, environmental modulation and evolution. Annual Review of Plant Biology. 56:99-131. Abstract
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2005.
The use of even-chain alkanes sprayed onto herbage as rate of passage markers in goats. Livestock Production Science. 100:195-202.
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2006.
Rice auxin influx carrier OsAUX1 facilitates root hair elongation in response to low external phosphate. Nature Communications. 9:ArticleNo.1408.
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2018.
Rice auxin influx carrier OsAUX1 facilitates root hair elongation in response to low external phosphate. Nature Communications. 9:ArticleNo.1408.
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2018.
Metabolic engineering of carotenoid biosynthesis in plants. Trends in Biotechnology. 26:139-145. Abstract
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2008.
Colour displays for categorical images. Color Research and Application. 32:304-309. Abstract
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2007.
Two-dimensional generalisations of dynamic programming for image analysis. Statistics and Computing. 19:49-56.
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2009.
Alignment and sub-pixel interpolation of images using Fourier methods. Journal of Applied Statistics. 34:217-230. Abstract
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2007.
Efficiency of functional regression estimators for combining multiple laser scans of cDNA microarrays. Biometrical Journal. 51:45-55.
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2009.
A spatiotemporal auto-regressive moving average model for solar radiation. Journal of the Royal Statistical Society Series C - Applied Statistics. 57:343-355. Abstract
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2008.
Genome sequence of the plant-pathogenic bacterium Dickeya dadantii 3937. Journal of Bacteriology. 193:2076-2077.
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2011.
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2019.
Modeling the ecological impact of phosphorus in catchments with multiple environmental stressors. Journal of Environmental Quality. 48:1336-1346.
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2019.
Testing the utility of structure-from-motion photogrammetry reconstructions using small unmanned aerial vehicles and ground photography to estimate the extent of upland soil erosion. Earth Surface Processes and Landforms. Published online..
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2017.
Testing the utility of structure-from-motion photogrammetry reconstructions using small unmanned aerial vehicles and ground photography to estimate the extent of upland soil erosion. Earth Surface Processes and Landforms. 42:1860-1871.
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2017.
Tracing of particulate organic C sources across the terrestrial-aquatic continuum, a case study at the catchment scale (Carminowe Creek, South West England). Science of the Total Environment. 616-617:1077-1088.
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2018.
A framework for valuing spatially targeted peatland restoration. Ecosystem Services. 9:20-33.
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2014.
Insurance, prevention or just wait and see? Public preferences for water management strategies in the context of climate change Ecological Economics. 69(11):2279-2291.
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2010.
How sure can you be? A framework for considering delivery uncertainty in benefit assessments based on stated preference methods Journal of Agricultural Economics. 62:25-46.
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2011.
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2011.
Inferring attribute non-attendance from discrete experiments: implications for benefit transfer. Environmental and Resource Economics. 60:497-520.
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2015.
Using local knowledge to model asymmetric preference formation in willingness to pay for environmental services. Journal of Environmental Management. 92:531-541.
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2011.
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2016.
NMR imaging of developing barley grains. Journal of Cereal Science. 43:70-78. Abstract
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2006.
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2022.
Small ruminant welfare: Levelling the playing field or raising the bar - a European perspective. Small Ruminant Research. 110:108-111.
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2013.
Welfare assessment in sheep. In Practice. 33:508-516.
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2011.
The perception of the welfare of sheep in extensive systems. Small Ruminant Research. 62(3):215-225.
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2006.
Light regulates plant alternative splicing through the control of transcriptional elongation. Molecular Cell. 73:1066-1074.e3.
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2019.
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2005.
Berry-enriched diet in salt-sensitive hypertensive rats: metabolic fate of (poly)phenols and the role of gut microbiota. Nutrients. 11:ArticleNo.2634.
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2019.
Automated saccharification assay for determination of digestibility in plant materials. Biotechnology for Biofuels. 3:-23.
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2010.
Microbial rhodopsins are major contributors to the solar energy captured in the sea. Science Advances. 5:ArticleNo.eaaw8855.
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2019.
The economic analysis in the implementation of the water framework directive in Spain. International Journal of River Basin Management. 11:301-310.
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2013.
White and green tea polyphenols inhibit pancreatic lipase in vitro. Food Research International. 43:1537-1544.
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2010.
Processing of 13C-labelled diatoms by a bathyal community at sub-zero temperatures. Marine Ecology Progress Series. 421:39-50.
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2011.
Microbial response to organic matter enrichment in the oligotrophic Levantine Basin (Eastern Mediterranean). Geomicrobiology Journal. 29:648-655.
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2012.
Occurrence of priming in the degradation of lignocellulose in marine sediments. PLoS ONE. 10:e0143917.
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2015.
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2013.
Cucumber mosaic virus 2b protein subcellular targets and interactions: Their significance to RNA silencing suppressor activity. Molecular Plant-Microbe Interactions. 23:294-303.
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2010.
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2012.
Spatial Bayesian belief networks as a planning decision tool for mapping ecosystem services trade-offs on multifunctional forested landscapes. Environmental Research. 144:15-26.
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2016.
National meeting of the Spanish Society of Nitrogen Fixation (XV SEFIN). Symbiosis. 67:1-2.
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2016.
Weak isolation by distance and geographic diversity gradients persist in Scottish relict pine forest, linked to flowering asynchrony and effective gene flow. iForest - Biogeosciences and Forestry. 11:449-458.
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2018.
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2014.
It's not the 'what', but the 'how': Exploring the role of debt in natural resource (un)sustainability. PLoS ONE. 13:ArticleNo.e0201141.
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2018.
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2019.
Three-dimensional modelling of chick embryo eye development and growth using high resolution magnetic resonance imaging. Experimental Eye Research. 89:511-521.
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2009.
Recovery of nitrogen from different sources following applications to winter wheat at and after anthesis. Field Crops Research. 100:143-154.
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2007.
Effects of drought stress and its sudden relief on free radical processes in barley. Journal of the Science of Food and Agriculture. 85:47-53. Abstract
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2005.
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2011.
Forging future organizational leaders for sustainability science. Nature Sustainability. 2:647-649.
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2019.
What the "food security" agenda means for animal conservation in terrestrial ecosystems. Animal Conservation. 15:115-116.
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2012.
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2014.
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2019.
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2021.
Synthesis of nanoparticles using plants. Nanoindustry. 7:16-22.
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2012.
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2014.
The Irish potato famine pathogen Phytophthora infestans originated in central Mexico rather than the Andes. Proceedings of the National Academy of Sciences of the USA. 111:8791-8796.
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2014.
Bioavailable concentrations of delphinidin and its metabolite, gallic acid, induce antioxidant protection associated with increased intracellular glutathione in cultured endothelial cells. Oxidative Medicine and Cellular Longevity. :ArticleNo.9260701.
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2017.
Bioactive polyphenols and cardiovascular disease: chemical antagonists, pharmacological agents or xenobiotics that drive an adaptive response? British Journal of Clinical Pharmacology. Published online..
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2017.
Bioactive polyphenols and cardiovascular disease: chemical antagonists, pharmacological agents or xenobiotics that drive an adaptive response? British Journal of Clinical Pharmacology. 174:1209-1225.
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2017.
Effect of short-term exposure to high-temperature on total gene expression in the leaves of four raspberry (Rubus idaeus L.) cultivars. Journal of Horticultural Science and Biotechnology. 89:532-541.
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2014.
Chlorophyll fluorescence and flowering behaviour of annual-fruiting raspberry cultivars under elevated temperature regimes. European Journal of Horticultural Science. 78:193-202.
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2013.
Resilience, panarchy and world-systems analysis. Ecology and Society. 12(1):24.
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2007.
Agent-based modelling of socio-ecological systems: Models, projects and ontologies. Ecological Complexity. 40:ArticleNo.100728.
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2019.
Size matters: large-scale replications of experiments with FEARLUS. Advances in Complex Systems. 13(4):453-467.
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2010.
When and how to imitate your neighbours: lessons from and for FEARLUS. Journal of Artificial Societies and Social Simulation. 12(3):2.
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2009.
Ramifying feedback networks, cross-scale interactions and emergent quasi-individuals in Conway's Game of Life. Artificial Life. 15(3):351-375.
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2009.
Experiments with a model of domestic energy demand. Journal of Artificial Societies and Social Simulation. 20:ArticleNo.11.
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2017.
Combining diverse data sources for CEDSS, an agent-based model of domestic energy demand. Structure and Dynamics: eJournal of Anthropological and Related Sciences. 7
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2014.
Testing a framework to co-construct social innovation actions. Insights from seven marginalized rural areas. Sustainability. 12:ArticleNo.1441.
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2020.
Factors affecting the incidence and severity of Spongospora subterranea infection and galling in potato roots. Plant Pathology. 56:1005-1013. Abstract
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2007.
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2005.
Escherichia coli O157:H7 transcriptome datasets for comparison of RNA-seq and microarray platforms. Data in Brief. 22:126-131.
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2019.
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2021.
New insight into wild red raspberry populations using simple sequence repeat markers. Journal of the American Society for Horticultural Science. 134:109-119. Abstract
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2009.
Using size fractionation and Pb isotopes to study Pb transport in the waters of an organic-rich upland catchment. Environmental Science and Technology. 40(4):1250-1256.
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2006.
Mapping gene H controlling cane pubescence in raspberry and its association with resistance to cane botyritis and spur blight, rust and cane spot. Theoretical and Applied Genetics. 112:818-831. Abstract
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2006.
Towards an understanding of the control of 'crumbly' fruit in red raspberry. SpringerPlus. 4:223.
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2015.
Genetical and comparative genomics of Brassica under altered Ca supply identifies Arabidopsis Ca-transporter orthologs. The Plant Cell. 26:2818-2830.
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2014.
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2007.
Towards an understanding of the nature of resistance to Phytophthora root rot in red raspberry. Theoretical and Applied Genetics. 123:585-601.
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2011.
Mapping QTLs for developmental traits in raspberry from bud break to ripe fruit. Theoretical and Applied Genetics. 118:1143-1155. Abstract
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2009.
Calcium polysulfide remediation of hexavalent chromium from chromite ore processing residue. The Science of the Total Environment. 364(1-3):32-44.
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2006.
Genetic and environmental regulation of plant architectural traits and opportunities for pest and disease control in raspberry. Annals of Applied Biology. 165:318-328.
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2014.
Roots affect the response of heterotrophic soil respiration to temperature in tussock grass microcosms. Annals of Botany. 110:253-258.
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2012.
Using artificial fluorescent particles as tracers of livestock wastes within an agricultural catchment. Science of the Total Environment. 409:1095-1103.
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2011.
The hydrological response of heavy clay grassland soils to rainfall in south-west England using . Rapid Communications in Mass Spectrometry. 24:475-482.
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2010.
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2015.
Optimising thermal imaging as a technique for detecting stomatal closure induced by drought stress under greenhouse conditions. Physiologia Plantarum. 127:507-518. Abstract
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2006.
Exploring thermal imaging variables for the detection of stress responses in grapevine under different irrigation regimes. Journal of Experimental Botany. 58:815-825. Abstract
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2007.
The impact of drought on leaf physiology of Quercus suber L. trees: comparison of an extreme drought event with chronic rainfall reduction. Journal of Experimental Botany. 61:4361-4371.
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2010.
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2009.
How do marine diatoms fix 10 billion tonnes of inorganic carbon per year? Canadian Journal of Botany - Review Canadienne de Botanique. 83:898-908. Abstract
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2005.
Annual variation of dietary deoxynivalenol exposure during years of different Fusarium prevalence: a pilot biomonitoring study. Food Additives and Contaminants Part A - Chemistry Analysis Control Exposure and Risk Assessment. 31:1579-1585.
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2014.
Dietary carbohydrate rather than protein intake drives colonic microbial fermentation during weight loss. European Journal of Nutrition. 58:1147-1158.
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2019.
Hybrid plants preserve unique genetic variation in the St Helena endemic trees Commidendrum rotundifolium DC Roxb. and C. spurium (G.Forst.) DC. Conservation Genetics. 18:241-246.
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2017.
Effect of pH on the cation exchange capacity of some halloysites nanotubes. Clay Minerals. 51:373-383.
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2016.
Spatially explicit estimates of in situ filtration by native oysters to augment ecosystem services during restoration. Estuaries and Coasts. 42:792-805.
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2019.
Adsorption of phosphate by halloysite (7 angstrom) nanotubes (HNTs). Clay Minerals. 55:184-193.
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2020.
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2020.
A geospatial framework to support integrated biogeochemical modelling in the United Kingdom. Environmental Modelling and Software. 68:219-232.
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2015.
Do plants use root-derived proteases to promote the uptake of soil organic nitrogen? Plant and Soil. 456:355-367.
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2020.
Is soluble protein mineralisation and protease activity in soil regulated by supply or demand? Soil Biology and Biochemistry. 150:ArticleNo.108007..
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2020.
Methodological bias associated with soluble protein recovery from soil. Scientific Reports. 8:ArticleNo.11186.
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2018.
The Ph1 locus suppresses Cdk2-type activity during premeiosis and meiosis in wheat. The Plant Cell. 24:152-162.
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2012.
Tillage-induced environmental conditions in soil and substrate limitation determine biogenic gas production. Soil Biology & Biochemistry. 38:2614-2628. Abstract
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2006.
Climate change and food security. Philosophical Transactions of the Royal Society of London - Series B. 360:2139-2148. Abstract
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2005.
Physical resilience of soil to field compaction and the interactions with plant growth and microbial community structure. European Journal of Soil Science. 58:1221-1232. Abstract
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2007.
Feeding nine billion: the challenge to sustainable crop production. Journal of Experimental Botany, 62, 5233-5239.. 62:5233-5239.
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2011.
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2022.
Attribution of climate change: a methodology to estimate the potential contribution to increases in potato yield in Scotland since 1960. Global Change Biology. 18:1372-1388.
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2012.
Contributions of roots and rootstocks to sustainable, intensified crop production. Journal of Experimental Botany. 64:1209-1222.
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2013.
Root phenomics of crops - opportunities and challenges. Functional Plant Biology. 36:922-929.
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2009.
Roots, rhizosphere and soil: the route to a better understanding of soil science? European Journal of Soil Science. 57:2-12. Abstract
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2006.
Climate change and the current 'food crisis'. CAB Reviews: Perspectives in Agriculture, Veterinary Science, Nutrition and Natural Resources. 3, 090:1-10. Abstract
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2008.
Integrating pests and pathogens into the climate change/food security debate. Journal of Experimental Botany. 60:2827-2838. Abstract
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2009.
Calculation of the compression index and precompression stress from soil compression test data. Soil and Tillage Research. 89:45-57. Abstract
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2006.
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2009.
Reciprocal carbon and nitrogen transfer between an ericaceous dwarf shrub and fungi isolated from Piceirhiza bicolorata ectomycorrhizas. New Phytologist. 182(2):359-366.
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2009.
A plant growth-promoting symbiosis between Mycena galopus and Vaccinium corymbosum seedlings. Mycorrhiza. 27:831-839.
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2017.
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2017.
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2008.
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2010.
Elevated amino acid biosynthesis in Phytophthora infestans during appressorium formation and potato infection. Fungal Genetics and Biology. 42:244-256. Abstract
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2005.
Bioindication potential of using molecular characterisation of the nematode community: response to soil tillage. European Journal of Soil Biology. 49:92-97.
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2012.
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2013.
Soil microbial and faunal community responses to Bt maize and insecticide in two soils. Journal of Environmental Quality. 35:734-741. Abstract
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2006.
Functional resilience of soil microbial communities depends on both soil structure and microbial community composition. Biology and Fertility of Soils. 44:745-754. Abstract
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2008.
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2010.
Molecular sequencing and morphological analysis of a nematode community. Applied Soil Ecology. 32:325-337. Abstract
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2006.
Biological and physical resilience of soil amended with heavy metal-contaminated sewage sludge. European Journal of Soil Science. 56:197-206. Abstract
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2005.
Effects of season and postharvest storage on the carotenoid content of Solanum phureja potato tubers. Journal of Agricultural and Food Chemistry. 55:379-385. Abstract
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2007.
Comparison of the calystegine composition and content of potato sprouts and tubers from Solanum tuberosum group Phureja and Solanum tuberosum group Tuberosum. Journal of Agricultural and Food Chemistry. 56:5197-5204.
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2008.
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2005.
Varietal effects of eight paired lines of transgenic Bt maize and near-isogenic non-Bt maize on soil microbial and nematode community structure. Plant Biotechnology Journal. 5:60-68. Abstract
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2007.
Soil microbial and faunal responses to herbicide tolerant maize and herbicide in two soils. Plant and Soil. 308:93-103. Abstract
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2008.
Probing soil physical and biological resilience data from a broad sampling of arable farms in Scotland. Soil Use and Management. 31:491-503.
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2015.
Microbial and microfaunal community structure in cropping systems with genetically modified plants. Pedobiologia. 51:195-206. Abstract
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2007.
Restoration of soil physical and biological stability are not coupled in response to plants and earthworms. Ecological Restoration. 26:102-104. Abstract
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2008.
Integrating soil quality changes to arable agricultural systems following organic matter addition, or adoption of a ley-arable rotation. Applied Soil Ecology. 46(1):43-53.
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2010.
The ODD protocol for describing individual-based and agent-based models: A first update. Ecological Modelling. 221(23):2760-2768.
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2010.
The ODD protocol for describing agent-based and other simulation models: a second update to improve clarity, replication, and structural realism. Journal of Artificial Societies and Social Simulation. 23:ArticleNo.7.
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2020.
Direct grafting of carbon nanotubes with ethylenediamine. Journal of Materials Chemistry. 22:21242-21248.
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2012.
The implication of input data aggregation on up-scaling soil organic carbon changes. Environmental Modelling and Software. 96:361-377.
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2017.
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2008.
Towards an understanding of how RxLR-effector proteins are translocated from oomycetes into host cells. Fungal Genetics Reviews. 24:27-36.
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2010.