Publications list
Nodulation and nitrogen fixation by mimosa spp. In the Cerrado and Caatinga biomes of Brazil. New Phytologist. 186(4):934-946.
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2010.
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2019.
Risk of erosion in peat soils - an investigation using Bayesian belief networks. Soil Use and Management. 27:538-549.
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2011.
Considerations for Scottish soil monitoring in the European context. European Journal of Soil Science. 60(5):833-843.
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2009.
Modelling land use decision behavior with Bayesian belief networks. Ecology and Society. 13(1):16.
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2008.
Genome sequence of the metazoan plant-parasitic nematode Meloidogyne incognita. Nature Biotechnology. 26:909-915.
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2008.
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2014.
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2006.
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2006.
The UNITE database for molecular identification of fungi - recent updates and future perspectives. New Phytologist. 186(2):281-285.
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2010.
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2016.
BrAPI - an Application Programming Interface for plant breeding applications. Bioinformatics. :ArticleNo.btz190.
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2019.
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2019.
The politico-economics of electricity planning in developing countries: a case study of Ghana. Energy Policy. 88:299-309.
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2016.
Understanding the economic barriers to the adoption of agroforestry A Real Options analysis. Journal of Environmental Management. 302
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2021.
Modelling the impact of market imperfections on farm household investment in stand-alone solar PV systems. World Development. 116:66-76.
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2019.
Efficiency effects of access to information on small-scale agriculture: empirical evidence from Uganda using stochastic frontier and IRT models. Journal of Agricultural Economics. Published online..
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2016.
The politico-economics of electricity planning in developing countries: a case study of Ghana. Energy Policy. 88:299-309.
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2016.
Efficiency effects of access to information on small-scale agriculture: empirical evidence from Uganda using stochastic frontier and IRT models. Journal of Agricultural Economics. 68:494-517.
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2017.
The economics of alternative crop production systems in the context of farmer participation in carbon trading markets. Agroecology and Sustainable Food Systems. 43:67-91.
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2019.
Efficiency effects of access to information on small-scale agriculture: empirical evidence from Uganda using stochastic frontier and IRT models. Journal of Agricultural Economics. Published online..
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2016.
Anaerobic digestion of feedstock grown on marginal land: break-even electricity prices. Energies. 10:ArticleNo.1416.
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2017.
Efficiency effects of access to information on small-scale agriculture: empirical evidence from Uganda using stochastic frontier and IRT models. Journal of Agricultural Economics. 68:494-517.
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2017.
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2008.
Contribution of gut microbial lysine to liver and milk amino acids in lactating does. British Journal of Nutrition. 100:977-983.
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2008.
Metabolic alterations in different development stages Pilocarpus microphyllus. Planta Medica. 77:293-300.
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2011.
Quantitative trait loci mapping of polyphenol metabolites in blackcurrant (Ribes nigrum). Metabolomics. 16:ArticleNo.25.
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2020.
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2021.
Estimating red deer abundance in a wide range of management situations in Mediterranean habitats. Journal of Zoology. 276(1):37-47.
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2008.
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2007.
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2005.
Characterisation of the cellulose binding protein Mj-cbp-1 of the root knot nematode, Meloidogyne javanica. Physiological and Molecular Plant Pathology. 72:21-28. Abstract
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2008.
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2009.
Aged riverine particulate organic carbon in four UK catchments. Science of the Total Environment. 536:648-654.
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2015.
Understanding plantation transformation using a size-structured spatial population model. Forest Ecology and Management. 261:799-809.
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2011.
Crops, nitrogen, water: are legumes friend, foe, or misunderstood ally? Trends in Plant Science. 23:539-550.
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2018.
ICTV Virus taxonomy profile: Virgaviridae. Journal of General Virology. 98:1999-2000.
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2017.
Legumes are different: Leaf nitrogen, photosynthesis, and water use efficiency. Proceedings of the National Academy of Sciences of the United States of America (PNAS). 113:4098-4103.
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2016.
Effects of local interaction and dispersal on the dynamics of size-structured populations. Ecological Modelling. 222:1414-1422.
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2011.
Disentangling critical success factors and principles of on-farm agricultural demonstration events. The Journal of Agricultural Education and Extension. Published online.
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2021.
How effective are heuristic solutions for electricity planning in developing countries. Socio-Economic Planning Sciences. 55:14-24.
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2016.
Geomorphic and retention responses following the restoration of a sand-gravel bed stream. Ecological Engineering. 130:131-146.
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2019.
Representing natural and artificial in-channel large wood in numerical hydraulic and hydrological models. Wiley Interdisciplinary Reviews - Water. 6:ArticleNo.e1389.
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2019.
Controls on the distribution of channel reach morphology in selectively glaciated catchments. Geomorphology. 211:121-133.
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2014.
An assessment of engineered log jam structures in response to a flood event in an upland gravel-bed river system. Earth Surface Processes and Landforms. Published online..
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2016.
Impacts of flow regulation on freshwater pearl mussel (Margaritifera margaritifera) habitat in a Scottish montane river. Science of the Total Environment. 432:318-328.
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2012.
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2011.
Corrigendum to impacts of flow regulation on freshwater pearl mussel (Margaritifera margaritifera) habitat in a Scottish montane river [Sci. Total Environ. 432 (2012) 318-328]. Science of The Total Environment. 475:155-155.
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2014.
Embankment lowering and natural self-recovery improves river-floodplain hydro-geomorphic connectivity of a gravel bed river. Science of the Total Environment. 770
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2021.
An assessment of engineered log jam structures in response to a flood event in an upland gravel-bed river system. Earth Surface Processes and Landforms. 41:1658-1670.
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2016.
Micro and nano sized particles in leachates from agricultural soils: phosphorus and sulfur speciation by x-ray micro-spectroscopy. Water Research. 189:ArticleNo.116585.
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2021.
Hierarchical Bayesian models in ecology: Reconstructing species interaction networks from non-homogeneous species abundance data. Ecological Informatics. 11:55-64.
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2012.
An evaluation of two-channel ChIP-on-chip and DNA methylation microarray normalization strategies. BMC Genomics. 13:42-42.
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2012.
Harpin confers some protection against bacterial pathogens of horticultural crops. The Dundee Conference: Crop Protection in Northern Britain 2016, Dundee, 23-24 February 2016.. :35-42.
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2016.
A scanner system for high-resolution quantification of variation in root growth dynamics of Brassica rapa genotypes. Journal of Experimental Botany. 65:2039-2048.
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2014.
Effects of rooting media on root growth and morphology of Brassica rapa seedlings. South African Journal of Plant and Soil. Published online.
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2016.
Effects of rooting media on root growth and morphology of Brassica rapa seedlings. South African Journal of Plant and Soil. 33:219-227.
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2016.
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2018.
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2018.
Carbon (13C) and nitrogen (15N) translocation in a maize-Striga hermonthica association. Experimental Agriculture. 41:321-333. Abstract
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2005.
Predicting alcohol yield from UK soft winter wheat for grain distilling: combined influence of hardness and nitrogen measurements. Journal of the Institute of Brewing. 115:183-190.
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2009.
Simulation of soil and surface water acidification: Divergence between one-box and two-box models? Applied Geochemistry. Special Issue on Acid Rain2005, 7th International Conference on Acid Deposition, June 12-17th 2005, Prague, Czech Republic.. 22(6):1167-1173.
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2007.
The impacts of future climate change and dissolved organic carbon on acidification recovery at Plastic Lake, Ontario. Hydrology and Earth System Sciences. 12:383-392.
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2008.
Biosurfactants for sustainable soil management. Advances in Agronomy.. 150:81-130.
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2018.
Trade-offs between indicators of performance and sustainability in breeding suckler beef herds. Journal of Agricultural Science. 155:156-170.
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2017.
Classification of Landsat TM imagery for land cover using neural networks. International Journal of Remote Sensing. 29(7):2075.
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2008.
EXPRESS: Exploring the impact of different input data types on soil variable estimation using the ICRAF-ISRIC global soil spectral database. Applied Spectroscopy. Published online..
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2017.
Digital mapping of soil ecosystem services in Scotland using neural networks and fuzzy classification. Part 1: Mapping of soil classes. Soil Use and Management. 35:205-2016.
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2019.
Digital RGB photography and visible-range spectroscopy for soil composition analysis. Geodrma. 313:265-275.
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2018.
Modelling doc export from catchments in Scotland using neural networks. Computers and Geosciences. 33:423-436.
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2007.
Prediction of soil characteristics and colour using data from the National Soils Inventory of Scotland. Geoderma. 200-201:99-107.
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2013.
Predicting Scottish topsoil organic matter content from colour and environmental factors. European Journal of Soil Science. 66:112-120.
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2015.
Predicting land cover using GIS, Bayesian and evolutionary algorithm methods. Journal of Environmental Management.. 90:236-250.
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2008.
Development and testing of a process-based soil model (MOSES) for ecosystem services. Ecological Modelling. 222:3795-3810.
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2011.
Neural network integration of field observations for soil endocrine disruptor characterisation. Science of the Total Environment. 468-469:240-248.
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2014.
Mapping soil carbon stocks across Scotland using a neural network model. Geoderma. 262:187-188.
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2015.
The state of play in machine/environment interactions. Artificial Intelligence Review. 25:247-276.
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2006.
Automating land cover mapping of Scotland using expert system and knowledge integration methods. Remote Sensing of Environment. 115:1285-1295.
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2011.
Mapping peat in Scotland with remote sensing and site characteristics. European Journal of Soil Science. 68:28-38.
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2017.
PHYLIS: A low-cost portable visible range spectrometer for soil and plants. Sensors. 17:ArticleNo.99.
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2017.
SPOT-VEGETATION - 15 years of success: What's next? International Journal of Remote Sensing. 35:2397-2401.
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2014.
Use of artificial neural networks in measuring characteristics of shielded radioactive plutonium for arms control. Journal of Analytical Atomic Spectrometry.. 27:432-439.
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2012.
Mapping soil profile depth, bulk density and carbon stock in Scotland using remote sensing and spatial covariates. European Journal of Soil Science. 71:553-567.
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2019.
Mapping soil carbon stocks across Scotland using a neural network model. Geoderma. 262:187-188.
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2016.
Neural network time series prediction of environmental variables in a small upland headwater in NE Scotland. Hydrological Processes. 22:3091-3101.
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2008.
Exploring the impact of different input data types on soil variable estimation using the ICRAF-ISRIC global soil spectral database. Applied Spectroscopy. 72:188-198.
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2018.
Mapping peat in Scotland with remote sensing and site characteristics. European Journal of Soil Science. 68:28-38.
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2017.
Improving land cover classification using recognition threshold neural networks. Photogrammetric Engineering and Remote Sensing. 73:413-421.
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2007.
Predicting sample source location from soil analysis using neural networks. Environmental Forensics. 15:281-292.
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2014.
Predicting soil chemical composition and other soil parameters from field observations using a neural network. Computers and Electronics in Agriculture. 82:108-116.
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2012.
Digital mapping of soil ecosystem services in Scotland using neural networks and relationship modelling. Part 2: Mapping of soil ecosystem services. Soil Use and Management. 35:217-231.
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2019.
Spatial and temporal variation of dissolved organic carbon export from gauged and ungauged watersheds of Dee Valley, Scotland: Effect of land cover and C:N. Water Resources Research article no. W05442.. 43(5)
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2007.
Multi-locus sequence typing of Ixodes ricinus and its symbiont Candidatus Midichloria mitochondrii across Europe reveals evidence of local co-cladogenesis in Scotland. Ticks and Tick-borne Diseases.. 10:52-62.
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2019.
A fully recombinant ELISA using in vivo biotinylated antibody fragments for the detection of Potato leaf roll virus. Journal of Virological Methods. 159:200-205.
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2009.
Seed dispersal by ungulates as an ecological filter: a trait-based meta-analysis. Oikos. 124:1109-1120.
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2015.
Evolving a conceptual framework to explore the links between human wellbeing and the environment. Environmental Scientist. 23:9-14.
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2014.
Quantifying the grazing impacts associated with different herbivores on rangelands. Journal of Applied Ecology. 44:1176-1187. Abstract
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2007.
Why assess the state of UK ecosystems and trends in the delivery of ecosystem services? Environmental Scientist. 23:4-8.
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2014.
Contrasting effects of summer and winter warming on body mass explain population dynamics in a food-limited Arctic herbivore. Global Change Biology. 23:1374-1389.
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2017.
Quantifying the grazing impacts associated with different herbivores on rangelands. Journal of Applied Ecology. 44(6):1176-1187.
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2007.
Contrasting effects of summer and winter warming on body mass explain population dynamics in a food-limited Arctic herbivore. Global Change Biology. Published online..
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2016.
Identification of candidate genes for calcium and magnesium accumulation in Brassica napus L. by association genetics. Frontiers in Plant Science. 8:ArticleNo.1968.
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2017.
Species-wide variation in shoot nitrate concentration, and genetic loci controlling nitrate, phosphorus and potassium accumulation in Brassica napus L. Frontiers in Plant Science. 9:ArticleNo.1487.
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2018.
The non-market value of reclaimed waste water for use in agriculture: a contingent valuation approach. Spanish Journal of Agricultural Research. 8(S2):187-196.
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2010.
Incorporating non-market benefits of reclaimed water into cost-benefit analysis: a case study of irrigated mandarin crops in southern Spain. Water Resources Management. 27:1809-1820.
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2013.
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2012.
Effectiveness of Calluna-heathland restoration methods after invasive plant control. Ecological Engineering. 54:218-226.
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2013.
Overcoming resistance and resilience of an invaded community is necessary for effective restoration: a multi-site bracken control study. Journal of Applied Ecology. 50:156-167.
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2013.
Chapter one - Plant-microbiota interactions as a driver of the mineral turnover in the rhizosphere. Advances in Applied Microbiology. 95:1-67.
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2016.
Technical assessment and evaluation of environmental models and software: Letter to the Editor. Environmental Modelling and Software. 26:328-336.
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2011.
Technical assessment and evaluation of environmental models and software: Letter to the Editor. Environmental Modelling and Software. 26(3):328-336.
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2010.
Biocidal potential of electrochemically activated solutions (ECAS) against Aeromonas sp. Enterobacter sp. and Escherichia coli in tap water. Journal of Water Process Engineering. 36:ArticleNo.101328.
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2020.
Genetic and QTL analyses of yield and a set of physiological traits in pepper. Euphytica. 190:181-201.
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2013.
Clay mineral variations in holocene terrestrial sediments from the Indus Basin. Quaternary Research. 77:368-381.
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2012.
A latent Gaussian model for multivariate consumption data. Food Quality and Preference. 18:508-516. Abstract
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2007.
Measurement and analysis of household carbon: the case of a UK city. Applied Energy. 164:871-881.
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2016.
Developmental metabolomics to decipher and improve fleshy fruit quality. Advances in Botanical Research. 98
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2021.
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2020.
Rapid UHPLC-MS metabolite profiling and phenotypic assays reveal genotypic impacts of nitrogen supplementation in oats. Metabolomics. 15:ArticleNo.42..
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2019.
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2019.
Investigating the inhibitory activity of green coffee and cacao bean extract on pancreatic lipase. Nutrition Bulletin. 35:207-212.
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2010.
Characterisation of Phytophthora infestans isolates of potato crops from Spain. Potato Research. 62:453-463.
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2019.
pH plays a role in the mode of action of trimethoprim on Escherichia coli. PLoS ONE. 13:ArticleNo.e0200272.
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2018.
The impact of raptors on the abundance of upland passerines and waders. Oikos. 117(8):1143-1152.
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2008.
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2014.
The MORPH-R web server and software tool for predicting missing genes in biological pathways. Physiologia Plantarum. 155:12-20.
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2015.
Pinus susceptibility to pitch canker triggers specific physiological responses in symptomatic plants: an integrated approach. Frontiers in Plant Science. 10:ArticleNo,509.
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2019.
A perspective on crn proteins in the genomics age: evolution, classification, delivery and function revisited. Frontiers in Plant Science. 8
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2017.
Random mutagenesis screen shows that Phytophthora capsici CRN83_152-mediated cell death is not required for its virulence function(s). Molecular Plant Pathology. 19:1114-1126.
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2018.
Nodulation and ecological significance of indigenous legumes in Scotland and Sweden. Symbiosis. 57:133-48.
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2012.
Greenhouse gas emissions from renewable energy sources: A review of lifecycle considerations. Renewable and Sustainable Energy Reviews. 39:461-475.
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2014.
Estimating U fluxes in a high-latitude, boreal post-glacial setting using U-series isotopes in soils and rivers. Chemical Geology. 354:22-32.
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2013.
Peat, water and plant tissue chemistry monitoring: A seven-year case-study in a restored peatland. Wetlands. 30(1):159-170.
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2010.
Agricultural studies of GM maize and the field experimental infrastructure of ECOGEN. Pedobiologia. 51:175-184. Abstract
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2007.
Nutrient mineralisation and microbial functional diversity in a restored bog approach natural conditions 10 years post restoration. Soil Biology and Biochemistry. 64:37-47.
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2013.
Changes in microbial community structure and function following Sphagnum peatland restoration. Soil Biology and Biochemistry. 42(2):291-301.
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2010.
Effect of dietary copper deficiency on iron metabolism in the pregnant rat. British Journal of Nutrition. 97:239-246. Abstract
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2007.
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2013.
Environmental control and spatial structures in peatland vegetation. Journal of Vegetation Science. 22:878-890.
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2011.
Microbial communities in natural and disturbed peatlands: a review. Soil Biology and Biochemistry. 57:979-994.
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2013.
Ectomycorrhizal fungi: exploring the mycelial frontier. FEMS Microbiology Reviews. 31(4):388-406.
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2007.
Basidiomycete fungal communities in Australia sclerophyll forest soil are altered by repeated prescribed burning. Mycological Research. 111(4):482-486.
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2007.
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2014.
DNA- and RNA- derived assessments of fungal community composition in soil amended with sewage sludge rich in cadmium, copper and zinc. Soil Biology and Biochemistry. 40(9):2358-2365.
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2008.
Detection of active soil fungi by RT-PCR amplification of precursor rRNA molecules. Journal of Microbiological Methods. 68(2):248-253.
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2007.
Fine-scale diversity and distribution of ectomycorrhizal fungal mycelium in a Scots pine forest. New Phytologist. 201:1423-1430.
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2014.
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2013.
Maternal undernutrition does not alter Sertoli cell numbers or the expression of key developmental markers in the mid-gestation ovine fetal testis. Journal of Negative Results in BioMedicine. 12
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2013.
Extension growth of Impatiens glandulifera at low irradiance: importance of nitrate and potassium accumulation. Annals of Botany. 95:641-648. Abstract
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2005.
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2007.
Positive plant microbial interactions. Annals of Applied Biology. 157:317-320.
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2010.
Is shoot growth correlated to leaf protein concentration? Trends in Plant Science. 12:531-532. Abstract
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2007.
Nitrogen fixation in legumes and actinorhizal plants in natural ecosystems: values obtained using N-15 natural abundance. Plant Ecology and Diversity. 4:131-140.
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2011.
A role for shoot protein in shoot-root dry matter allocation in higher plants. Annals of Botany. 97:3-10. Abstract
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2006.
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2018.
Elevated CO2 effects on nitrogen assimilation and growth of C-3 vascular plants are similar regardless of N-form assimilated. Journal of Experimental Botany. 70:683-690.
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2019.
Positive plant microbial interactions in perennial ryegrass dairy pasture systems. Annals of Applied Biology. 159:79-92.
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2011.
Seed dormancy, nitrogen nutrition and shade acclimation of Impatiens glandulifera: implications for its successful invasion of a deciduous woodland. Plant Ecology and Diversity. 2:145-153.
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2009.
Do plants need nitrate? The mechanisms by which nitrogen form affects plants Annals of Applied Biology. 163:174-199.
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2013.
Nitrogen use efficiency. 3. Nitrogen fixation: genes and costs. Annals of Applied Biology. 155:1-13.
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2009.
The Maltase involved in starch metabolism in barley endosperm is encoded by a single gene. PLoS One. 11:e0151642.
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2016.
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2010.
Mineralogical budgeting of potassium in soil: a basis for understanding standard measures of reserve potassium. Journal of Plant Nutrition and Soil Science. 169:605-615.
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2006.
Long-term K dynamics in organic and conventional mixed cropping systems as related to management and soil properties. Agriculture, Ecosystems and Environment. 122(4):413-426.
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2007.
Acid-extractable potassium in agricultural soils: Source minerals according by differential and quantitative x-ray diffraction. Journal of Plant Nutrition and Soil Science. 176:407-419.
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2013.
Yeast-assisted synthesis of polypyrrole: quantification and influence on the mechanical properties of the cell wall. Colloids and Surfaces B: Biointerfaces. 164:224-231.
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2018.
Stability and variability of virulence of Phytophthora infestans assessed in a ring test across European laboratories. Plant Pathology. 60:556-565.
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2011.
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2007.
Differential effectiveness of berry polyphenols as anti-giardial agents. Parasitology. 138:1110-1116.
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2011.
Bacterial chemoattraction towards jasmonate plays a role in the entry of Dickeya dadantii through wounded tissues. Molecular Microbiology. 74:662-671.
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2009.
Soil quality indices for metal(loid) contamination: an-enzymatic perspective. Land Degradation and Development. 31:2700-2719.
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2020.
Enzyme activities and microbial functional diversity in metal(loid) contaminated soils near to a copper smelter. Science of the Total Environment. 779:ArticleNo.146423.
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2021.
Meta-analysis of heavy metal effects on soil enzyme activities. Science of the Total Environment. 737:ArticleNo.139744.
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2020.
Meta analysis of heavy metal effects on soil enzyme activities. Science of the Total Environment. 737:ArticleNo.139744.
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2020.
Food waste reduction in supply chains through innovations: a review. Measuring Business Excellence.. 25:475-492.
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2021.
Integrating hyperspectral imagery at different scales to estimate component surface temperatures. International Journal of Remote Sensing. 27:2141-2159. Abstract
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2006.
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2016.
Evolution and biogeography of actinorhizal plants and legumes: A comparison. Journal of Ecology. 109:1098-1121.
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2021.
From farm to kitchen: how gender affects production diversity and the dietary intake of farm households in Ethiopia. Journal of Agricultural Economics. 72:262-292.
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2021.
A sequence-ready physical map of barley anchored genetically by two million single-nucleotide polymorphisms. Plant Physiology. 164:412-423.
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2014.
Modulating effects of ontogeny on the outcome of plant-plant interactions along stress gradients. New Phytologist. 200:7-9.
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2013.
The relative importance of nitrogen deposition as a driver of Racomitrium heath species composition and richness across Europe. Biological Conservation. 171:224-231.
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2014.
Grazing exclusion and phosphorus addition as potential local management options for the restoration of alpine moss-sedge heath. Biological Conservation. 153:17-24.
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2012.
Assessing the recovery potential of alpine moss-sedge heath: reciprocal transplants along a nitrogen deposition gradient. Environmental Pollution. 159:140-147.
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2011.
Nitrogen deposition enhances moss growth but leads to an overall decline in habitat condition in mountain moss-sedge heath. Global Change Biology. 18:290-300.
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2012.
Tracking disease resistance deployment in potato breeding by enrichment sequencing. New Phytologist. Published online..
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In Press.
Tracking disease resistance deployment in potato breeding by enrichment sequencing. Plant Biotechnology Journal. 17:540-549.
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2019.
Segregation and recombination of a multipartite mitochondrial DNA in populations of the potato cyst nematode Globodera pallida. Journal of Molecular Evolution. 64:689-701. Abstract
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2007.
An ancestral oomycete locus contains late blight avirulence gene Avr3a, encoding a protein that is recognised in the host cytoplasm. Proceedings of the National Academy of Sciences, USA. 102:7766-7771. Abstract
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2005.
The drivers of change for the contribution of small farms to regional food security in Europe. Global Food Security. 26:ArticleNo.100395.
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2020.
Paternal attractiveness and the effects of differential allocation of parental investment. Animal Behaviour. 113:69-78.
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2016.
Partial complementation of Sinorhizobium meliloti bacA mutant phenotypes by the Mycobacterium tuberculosis BacA protein. Journal of Bacteriology. 195:389-398.
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2013.
Circadian rhythmicity persists through the Polar night and midnight sun in Svalbard reindeer. Scientific Reports. 8:ArticleNo.14466.
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2018.
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2014.
Assessing environmental impacts of genetically modified plants on non-target organisms: The relevance of in planta studies. Science of the Total Environment. 583:123-132.
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2017.
The effect of heat stress on sugar beet recombination. Theoretical and Applied Genetics.
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2020.
The effect of heat stress on sugar beet recombination. Theoretical and Applied Genetics. 134:81-93.
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2021.
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2017.
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2017.
Towards more effective online environmental information provision through tailored natural language generation: Profiles of Scottish river user groups and an evaluative online experiment. Science of the Total Environment. 673:643-655.
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2019.