Katrin MacKenzie
Biography
- BSc in Mathematics and Statistics, Aberdeen University.
- MSc in Applied Statistics, Napier University.
- PhD Genetic Epidemiology, Edinburgh University.
- Post-doc, Roslin Institute.
- Joined BioSS in 2002.
Areas of Expertise
- Statistical Genetics.
- Linkage Disequilibrium Mapping.
- General Statistical Consultancy.
- BioSS training courses on Basic Statistics and Sequence Analysis.
Bibliography
- Holland, J.; Brown, J.L.; MacKenzie, K.; Neilson, R.; Piras, S.; McKenzie, B.M. (2021) Over winter cover crops provide yield benefits for spring barley and maintain soil health in northern Europe., European Journal of Agronomy, 130, Article No. 126363
- Roberts, D.M.; Boag, B.; Hunter, F.; Tarlton, J.; MacKenzie, K.; Neilson, R. (2020) Genetic variability of Arthurdendyus triangulatus (Dendy, 1894), a non-native invasive land planarian., ZooTaxa, 4808, 38-50
- Sharma, S.K.; MacKenzie, K.; McLean, K.; Dale, F.; Daniels, S.; Bryan, G.J. (2018) Linkage disequilibrium and evaluation of genome-wide association mapping models in tetraploid potato., G3: Genes, Genomes, Genetics, 8, 3185-3202.
- Skelsey, P.; Kettle, H.; MacKenzie, K.; Blok, V. (2018) Potential impacts of climate change on the threat of potato cyst nematode species in Great Britain., Plant Pathology, 67, 909-919.
- Newton, A.C.; Guy, D.C.; Valentine, T.; George, T.S.; McKenzie, B.M.; Hackett, C.A. (2018) Differential adaptation of spring barley cultivars to inversion and non-inversion tillage., Crop Protection in Northern Britain 2018: The Dundee Conference, Environmental Management and Crop Production, Apex City Quay Hotel, Dundee, 27-28 February 2018. Conference Proceedings, pp109-114.
- Martin, P.; Dalmannsdóttir, S.; Gerdinum, J.I.I.; Halland, H.; Hermannsson, J.; Kavanagh, V.; MacKenzie, K.; Reykdal, O.; Russell, J.; Sveinsson, S.; Thomsen, M.; Wishart, J. (2017) Recent warming across the North Atlantic region may be contributing to an expansion in barley cultivation., Climatic Change, 145, 351-365.
- Bruce, T.J.A.; Smart, L.; Birch, A.N.E.; Blok, V.C.; Mackenzie, K.; Guerrieri, E.; Cascone, P.; Luna, E.; Ton, J. (2017) Prospects for plant defence activators and biocontrol in IPM - concepts and lessons learnt so far., Crop Protection, 97, 128-134.
- Lazarova, S.S.; Brown, D.J.F.; Oliveira, C.M.G.; Fenton, B.; Mackenzie, K.; Wright, F.; Malloch, G.; Neilson, R. (2016) Diversity of endosymbiont bacteria associated with a non-filarial nematode group., Nematology, 18, 615-623.
- de Jesus, D.S.; Oliveira, C.M.G.; Roberts, D.; Blok, V.; Neilson, R.; Prior, T.; Balbino, H.M.; MacKenzie, K.M.; Oliveira, R.D.D. (2016) Morphological and molecular characterisation of Aphelenchoides besseyi and A. fujianensis (Nematoda: Aphelenchoididae) from rice and forage grass seeds in Brazil., Nematology, 18, 337-356.
- MacKenzie, K.; Williamson, S.; Smith, K.; Woodhead, M.; McCallum, S.; Graham, J. (2015) Characterisation of Gene H in red raspberry: Explaining its role in cane morphology, disease resistance and timing of fruit ripening., Journal of Horticulture, 2, 144.
- Brierley, J.L.; Hilton, A.J.; Wale, S.J.; Peters, J.C.; Gladders, P.P.; Bradshaw, N.J.; Ritchie, F.; Mackenzie, K.; Lees, A.K. (2015) Factors affecting the development and control of black dot on potato tubers., Plant Pathology, 64, 167-177.
- Kaczmarek, A.; MacKenzie, K.; Kettle, H.; Blok, V.C. (2014) Influence of soil temperature on Globodera rostochiensis and Globodera pallida., Phytopathologia Mediterranea, 53, 396-405.
- Schreiber, M.; Wright, F.; MacKenzie, K.; Hedley, P.E.; Schwerdt, J.G.; Little, A.; Burton, R.A.; Fincher, G.B.; Marshall, D.; Waugh, R.; Halpin, C. (2014) The barley genome sequence assembly reveals three additional members of the CsIF (1,3;1,4) - beta-glucan synthase gene family., PLoS ONE, 9, Article No. e90888.
- Kaczmarek, A.; MacKenzie, K.; Kettle, H.; Blok, V.C. (2014) Increasing soil temperatures will likely benefit potato cyst nematodes., Crop Protection in Northern Britain, Environmental Management and Crop Protection, West Park Conference Centre, Dundee, 25-26 February 2014.
- Wright, K.M.; MacKenzie, K.M. (2014) Probing protein targeting to plasmodesmata using fluorescence recovery after photo-bleaching., In: Heinlein, M. (ed.). Plasmodesmata, Methods in Molecular Biology. (Methods and Protocols, Volume 1217). Chapter 17, pp259-274.
- MacKenzie, K.; Hackett, C.A. (2012) Association mapping in a simulated barley population., Euphytica, 183, 337-347.
- Clark, K.E.; Hartley, S.E.; Brennan, R.M.; MacKenzie, K.; Johnson, S.N. (2012) Oviposition and feeding behaviour by the vine weevil Otiorhynchus sulcatus on red raspberry: effects of cultivars and plant nutritional status., Agricultural and Forest Entomology, 14, 157-163.
- Jupe, F.; Pritchard, L.; Etherington, G.; MacKenzie, K.; Cock, P.J.A.; Wright, F.; Sharma, S.K.; Bolser, D.; Bryan, G.J.; Jones, J.; Hein, I. (2012) Identification and localisation of the NB-LRR gene family within the potato genome., BMC Genomics,13, 1-14.
- Clark, K.E.; Hartley, S.E.; Brennan, R.M.; MacKenzie, K.; Johnson, S.N. (2012) Investigating preference-performance relationships in aboveground-belowground life cycles: a laboratory and field study with the vine weevil (Otiorhynchus sulcatus)., Bulletin of Entomological Research, 102, 63-70.
- Graham, J.; Hackett, C.A.; Smith, K.; Woodhead, M.; MacKenzie, K.; Tierney, I.; Cooke, D.E.L.; Bayer, M.M.; Jennings, N. (2011) Towards an understanding of the nature of resistance to Phytophthora root rot in red raspberry., Theoretical and Applied Genetics, 123, 585-601.
- Comadran, J.; Ramsay, L.; MacKenzie, K.; Hayes, P.; Close, T.J.; Muehlbauer, G.; Stein, N.; Waugh, R. (2011) Patterns of polymorphism and linkage disequilibrium in cultivated barley., Theoretical and Applied Genetics, 122, 523-531.
- Ramsay, L.; Comadran, J.; Druka, A.; Marshall, D.F.; Thomas, W.T.B.; Macaulay, M.; MacKenzie, K.; Simpson, C.G.; Fuller, J.; Bonar, N.; Hayes, P.M.; Lundqvist, U.; Franckowiak, J.D.; Close, T.J.; Muehlbauer, G.; Waugh, R. (2011) INTERMEDIUM-C, a modifier of lateral spikelet fertility in barley, is an ortholog of the maize domestication gene TEOSINTE BRANCHED 1., Nature Genetics, 43, 169-172.
- Woodhead, M.; Weir, A.; Smith, K.; McCallum, S.; MacKenzie, K.; Graham, J. (2010) Functional markers for red raspberry., Journal of the American Society for Horticultural Science, 135, 418-427.
- Ramsay, L.; Comadran, J.; Thomas, W.T.B.; Marshall, D.F.; Druka, A.; MacKenzie, K.; Bhat, P.; Close, T.J.; Waugh, R. (2008) Barley genomics: Development and application of SNP genotyping., 5th UK Cereal Genetics and Genomics Workshop, Rothamsted, 16-18 April 2008.
- Wright, K.M.; Wood, N.T.; Roberts, A.G.; Chapman, S.N.; Boevink, P.; MacKenzie, K.; Oparka, K.J. (2007) Targeting of TMV movement protein to plasmodesmata requires the actin/ER network: Evidence from FRAP., Traffic, 8, 21-31.
- Mazzitelli, L.; Hancock, R.D.; Haupt, S.; Walker, P.G.; Pont, S.D.A.; McNicol, J.W.; Cardle, L.; Morris, J.; Viola, R.; Brennan, R.M.; Hedley, P.E.; Taylor, M.A. (2007) Co-ordinated gene expression during phases of dormancy release in raspberry (Rubus idaeus L.) buds., Journal of Experimental Botany, 58, 1035-1045.
- Rostoks, N.; Ramsay, L.; MacKenzie, K.; Cardle, L.; Bhat, P.R.; Roose, M.L.; Svensson, J.T.; Stein, N.; Varshney, R.K.; Marshall, D.F.; Graner, A.; Close, T.J.; Waugh, R. (2006) Recent history of artificial outcrossing facilitates whole-genome association mapping in elite inbred crop varieties., Proceedings of the National Academy of Sciences of the United States of America (PNAS), 103, 18656-18661.
- Boevink, P.; Wright, K.M.; Roberts, A.G.; Wood, N.; MacKenzie, K.; Oparka, K.J. (2005) Towards a new model for TMV movement., Plasmodesmata 2004, Monterey, California, USA, 17-21 August 2004.
- Graham, J.; Smith, K.; MacKenzie, K.; Jorgensen, L.; Hackett, C.A.; Powell, W. (2004) The construction of a genetic linkage map of red raspberry (Rubus idaeus subsp. idaeus) based on AFLPs, genomic-SSR and EST-SSR markers., Theoretical and Applied Genetics, 109, 740-749.
- Wright, K.M.; Wood, N.T.; Roberts, A.G.; Boevink, P.; Gillespie, T.; MacKenzie, K.; Oparka, K.J. (2004) Plasmodesmal targeting of TMV movement protein utilises the ER/actin network., Plasmodesmata 2004, Monterey, California, USA, August 17-21 2004.
- Holland, J.; Brown, J.L.; MacKenzie, K.; Neilson, R.; Piras, S.; McKenzie, B.M. (2021) Over winter cover crops provide yield benefits for spring barley and maintain soil health in northern Europe., European Journal of Agronomy, 130, Article No. 126363
- Roberts, D.M.; Boag, B.; Hunter, F.; Tarlton, J.; MacKenzie, K.; Neilson, R. (2020) Genetic variability of Arthurdendyus triangulatus (Dendy, 1894), a non-native invasive land planarian., ZooTaxa, 4808, 38-50
- Sharma, S.K.; MacKenzie, K.; McLean, K.; Dale, F.; Daniels, S.; Bryan, G.J. (2018) Linkage disequilibrium and evaluation of genome-wide association mapping models in tetraploid potato., G3: Genes, Genomes, Genetics, 8, 3185-3202.
- Skelsey, P.; Kettle, H.; MacKenzie, K.; Blok, V. (2018) Potential impacts of climate change on the threat of potato cyst nematode species in Great Britain., Plant Pathology, 67, 909-919.
- Martin, P.; Dalmannsdóttir, S.; Gerdinum, J.I.I.; Halland, H.; Hermannsson, J.; Kavanagh, V.; MacKenzie, K.; Reykdal, O.; Russell, J.; Sveinsson, S.; Thomsen, M.; Wishart, J. (2017) Recent warming across the North Atlantic region may be contributing to an expansion in barley cultivation., Climatic Change, 145, 351-365.
- Bruce, T.J.A.; Smart, L.; Birch, A.N.E.; Blok, V.C.; Mackenzie, K.; Guerrieri, E.; Cascone, P.; Luna, E.; Ton, J. (2017) Prospects for plant defence activators and biocontrol in IPM - concepts and lessons learnt so far., Crop Protection, 97, 128-134.
- Lazarova, S.S.; Brown, D.J.F.; Oliveira, C.M.G.; Fenton, B.; Mackenzie, K.; Wright, F.; Malloch, G.; Neilson, R. (2016) Diversity of endosymbiont bacteria associated with a non-filarial nematode group., Nematology, 18, 615-623.
- de Jesus, D.S.; Oliveira, C.M.G.; Roberts, D.; Blok, V.; Neilson, R.; Prior, T.; Balbino, H.M.; MacKenzie, K.M.; Oliveira, R.D.D. (2016) Morphological and molecular characterisation of Aphelenchoides besseyi and A. fujianensis (Nematoda: Aphelenchoididae) from rice and forage grass seeds in Brazil., Nematology, 18, 337-356.
- MacKenzie, K.; Williamson, S.; Smith, K.; Woodhead, M.; McCallum, S.; Graham, J. (2015) Characterisation of Gene H in red raspberry: Explaining its role in cane morphology, disease resistance and timing of fruit ripening., Journal of Horticulture, 2, 144.
- Brierley, J.L.; Hilton, A.J.; Wale, S.J.; Peters, J.C.; Gladders, P.P.; Bradshaw, N.J.; Ritchie, F.; Mackenzie, K.; Lees, A.K. (2015) Factors affecting the development and control of black dot on potato tubers., Plant Pathology, 64, 167-177.
- Kaczmarek, A.; MacKenzie, K.; Kettle, H.; Blok, V.C. (2014) Influence of soil temperature on Globodera rostochiensis and Globodera pallida., Phytopathologia Mediterranea, 53, 396-405.
- Schreiber, M.; Wright, F.; MacKenzie, K.; Hedley, P.E.; Schwerdt, J.G.; Little, A.; Burton, R.A.; Fincher, G.B.; Marshall, D.; Waugh, R.; Halpin, C. (2014) The barley genome sequence assembly reveals three additional members of the CsIF (1,3;1,4) - beta-glucan synthase gene family., PLoS ONE, 9, Article No. e90888.
- MacKenzie, K.; Hackett, C.A. (2012) Association mapping in a simulated barley population., Euphytica, 183, 337-347.
- Clark, K.E.; Hartley, S.E.; Brennan, R.M.; MacKenzie, K.; Johnson, S.N. (2012) Oviposition and feeding behaviour by the vine weevil Otiorhynchus sulcatus on red raspberry: effects of cultivars and plant nutritional status., Agricultural and Forest Entomology, 14, 157-163.
- Jupe, F.; Pritchard, L.; Etherington, G.; MacKenzie, K.; Cock, P.J.A.; Wright, F.; Sharma, S.K.; Bolser, D.; Bryan, G.J.; Jones, J.; Hein, I. (2012) Identification and localisation of the NB-LRR gene family within the potato genome., BMC Genomics,13, 1-14.
- Clark, K.E.; Hartley, S.E.; Brennan, R.M.; MacKenzie, K.; Johnson, S.N. (2012) Investigating preference-performance relationships in aboveground-belowground life cycles: a laboratory and field study with the vine weevil (Otiorhynchus sulcatus)., Bulletin of Entomological Research, 102, 63-70.
- Graham, J.; Hackett, C.A.; Smith, K.; Woodhead, M.; MacKenzie, K.; Tierney, I.; Cooke, D.E.L.; Bayer, M.M.; Jennings, N. (2011) Towards an understanding of the nature of resistance to Phytophthora root rot in red raspberry., Theoretical and Applied Genetics, 123, 585-601.
- Comadran, J.; Ramsay, L.; MacKenzie, K.; Hayes, P.; Close, T.J.; Muehlbauer, G.; Stein, N.; Waugh, R. (2011) Patterns of polymorphism and linkage disequilibrium in cultivated barley., Theoretical and Applied Genetics, 122, 523-531.
- Ramsay, L.; Comadran, J.; Druka, A.; Marshall, D.F.; Thomas, W.T.B.; Macaulay, M.; MacKenzie, K.; Simpson, C.G.; Fuller, J.; Bonar, N.; Hayes, P.M.; Lundqvist, U.; Franckowiak, J.D.; Close, T.J.; Muehlbauer, G.; Waugh, R. (2011) INTERMEDIUM-C, a modifier of lateral spikelet fertility in barley, is an ortholog of the maize domestication gene TEOSINTE BRANCHED 1., Nature Genetics, 43, 169-172.
- Woodhead, M.; Weir, A.; Smith, K.; McCallum, S.; MacKenzie, K.; Graham, J. (2010) Functional markers for red raspberry., Journal of the American Society for Horticultural Science, 135, 418-427.
- Wright, K.M.; Wood, N.T.; Roberts, A.G.; Chapman, S.N.; Boevink, P.; MacKenzie, K.; Oparka, K.J. (2007) Targeting of TMV movement protein to plasmodesmata requires the actin/ER network: Evidence from FRAP., Traffic, 8, 21-31.
- Mazzitelli, L.; Hancock, R.D.; Haupt, S.; Walker, P.G.; Pont, S.D.A.; McNicol, J.W.; Cardle, L.; Morris, J.; Viola, R.; Brennan, R.M.; Hedley, P.E.; Taylor, M.A. (2007) Co-ordinated gene expression during phases of dormancy release in raspberry (Rubus idaeus L.) buds., Journal of Experimental Botany, 58, 1035-1045.
- Rostoks, N.; Ramsay, L.; MacKenzie, K.; Cardle, L.; Bhat, P.R.; Roose, M.L.; Svensson, J.T.; Stein, N.; Varshney, R.K.; Marshall, D.F.; Graner, A.; Close, T.J.; Waugh, R. (2006) Recent history of artificial outcrossing facilitates whole-genome association mapping in elite inbred crop varieties., Proceedings of the National Academy of Sciences of the United States of America (PNAS), 103, 18656-18661.
- Graham, J.; Smith, K.; MacKenzie, K.; Jorgensen, L.; Hackett, C.A.; Powell, W. (2004) The construction of a genetic linkage map of red raspberry (Rubus idaeus subsp. idaeus) based on AFLPs, genomic-SSR and EST-SSR markers., Theoretical and Applied Genetics, 109, 740-749.
- Wright, K.M.; MacKenzie, K.M. (2014) Probing protein targeting to plasmodesmata using fluorescence recovery after photo-bleaching., In: Heinlein, M. (ed.). Plasmodesmata, Methods in Molecular Biology. (Methods and Protocols, Volume 1217). Chapter 17, pp259-274.
- Wright, K.M.; Wood, N.T.; MacKenzie, K.; Oparka, K.J. (2003) Studying plasmodesmatal targeting of TMV-MP using FRAP., Annual Report of the Scottish Crop Research Institute for 2002/2003, pp97.
- Newton, A.C.; Guy, D.C.; Valentine, T.; George, T.S.; McKenzie, B.M.; Hackett, C.A. (2018) Differential adaptation of spring barley cultivars to inversion and non-inversion tillage., Crop Protection in Northern Britain 2018: The Dundee Conference, Environmental Management and Crop Production, Apex City Quay Hotel, Dundee, 27-28 February 2018. Conference Proceedings, pp109-114.
- Kaczmarek, A.; MacKenzie, K.; Kettle, H.; Blok, V.C. (2014) Increasing soil temperatures will likely benefit potato cyst nematodes., Crop Protection in Northern Britain, Environmental Management and Crop Protection, West Park Conference Centre, Dundee, 25-26 February 2014.
- Ramsay, L.; Comadran, J.; Thomas, W.T.B.; Marshall, D.F.; Druka, A.; MacKenzie, K.; Bhat, P.; Close, T.J.; Waugh, R. (2008) Barley genomics: Development and application of SNP genotyping., 5th UK Cereal Genetics and Genomics Workshop, Rothamsted, 16-18 April 2008.
- Boevink, P.; Wright, K.M.; Roberts, A.G.; Wood, N.; MacKenzie, K.; Oparka, K.J. (2005) Towards a new model for TMV movement., Plasmodesmata 2004, Monterey, California, USA, 17-21 August 2004.
- Wright, K.M.; Wood, N.T.; Roberts, A.G.; Boevink, P.; Gillespie, T.; MacKenzie, K.; Oparka, K.J. (2004) Plasmodesmal targeting of TMV movement protein utilises the ER/actin network., Plasmodesmata 2004, Monterey, California, USA, August 17-21 2004.
- Sharma, S.K.; Bayer, M.; MacKenzie, K.; McLean, K.; Dale, F.; Taylor, M.; Bryan, G.J. (2018) Sequence-based genotyping and trait analysis in potato., 15th Solanaceae Conference (SOL2018), Chiang Mai, Thailand, 30 September - 4 October 2018. Abstract
- Lazarova, S.S; Brown, D.J.F.; Oliveira, C.M.G.; Fenton, B.; MacKenzie, K.; Wright, F.; Malloch, G.; Neilson, R. (2016) Diversity of endosymbiont bacteria associated with Xiphinema americanum-group parasitic nematodes., Linking Belowground Biodiversity and Ecosystem Function in European Forests, 4th BioLink COST Action Meeting, Sofia, Bulgaria, 12-14 April 2016. Poster.
- Sharma, S.K.; Bayer, M.; McLean, K.; MacKenzie, K.; Daniels, S.; Dale, F.; Bryan, G. (2015) Application of genotyping-by-sequencing and genome-wide association analysis in tetraploid potato, 3rd Plant Genomics Congress, 11-12 May 2015, London, UK.
- Sharma, S.K.; Bayer, M.; McLean, K.; MacKenzie, K.; Daniels, S.; Dale, F.; Bryan, G. (2015) Genome-wide association studies using high-throughput SNP analysis in tetraploid potato, 12th Solanaceae Conference (SOL 2015), 25-29 October 2015, Bordeaux, France.
- Sharma, S.K.; Bayer, M.; McLean, K.; MacKenzie, K.; Daniels, S.; Dale, F.; Bryan, G. (2014) Application of genotyping-by-sequencing for identifying SNP variation and performing genome-wide association studies in a tetraploid potato association panel, 19th Triennial Conference of the European Association for Potato Research (EAPR), 6-11 July 2014, Brussels, Belgium.
- Sharma, S.K.; Bayer, M.; McLean, K.; MacKenzie, K.; Daniels, S.; Dale, F.; Bryan, G. (2014) Genotyping-by-sequencing and genome-wide association analysis in tetraploid potato, 11th Solanaceae Conference (SOL 2014), 2-6 November 2014, Porto Seguro-BA, Brazil.
- Boag, B.; Neilson, R.; MacKenzie, K.; McNicol, J. (2013) Suggested sampling protocol for the New Zealand flatworm., Invasive and Non-Native Species and Biosecurity, Sharing Good Practice Event, Scottish Natural Heritage, Battleby Conference Centre, Perth, 21 November 2013.
