John Jones

Publications

The following Publications have not yet been migrated to the James Hutton Institute's Pure service and relate to the research outputs from the two legacy organisations: The Macaulay Land Use Research Institute and The Scottish Crop Research Institute.

Journals

• Yan, X.; De Clercq, P.; Han, R.; Jones, J.T.; Chen, S.; Moens, M. (2011) Osmotic responses of different strains of Steinernema carpocapsae., Nematology, 13, 845-851.
• Haegeman, A.; Jones, J.T.; Danchin, E.G.J. (2011) Horizontal gene transfer in nematodes: a catalyst for plant parasitism?, Molecular Plant-Microbe Interactions, 24, 879-887.
• Veronico, P.; Melillo, M.T.; Saponaro, C.; Leonetti, P.; Picardi, E.; Jones, J.T. (2011) A polygalacturonase-inhibiting protein with a role in pea defence against the cyst nematode Heterodera goettingianna., Molecular Plant Pathology, 12, 275-287.
• Karim, N.; Jones, J.T.; Okada, H.; Kikuchi, T. (2009) Analysis of expressed sequence tags and identification of genes encoding cell-wall-degrading enzymes from the fungivorous nematode Aphelenchus avenae., BMC Genomics, 10, 525.
• Jones, J.T.; Kumar, A.; Pylypenko, L.A.; Thirugnanasambandam, A.; Castelli, L.; Chapman, S.N.; Cock, P.J.A.; Grenier, E.; Lilley, C.J.; Phillips, M.S.; Blok, V.C. (2009) Identification and functional characterization of effectors in expressed sequence tags from various life cycle stages of the potato cyst nematode Globodera pallida., Molecular Plant Pathology, 10, 815 – 828.
• Kikuchi, T.; Li, H.; Karim, N.; Kennedy, M.W.; Moens, M.; Jones, J.T. (2009) Identification of putative expansin-like genes from the pine wood nematode, Bursaphelenchus xylophilus, and evolution of the expansin gene family within the Nematoda., Nematology, 11, 355-364.
• Rehman, S.; Butterbach, P.; Popeijus, H.; Overmars, H.; Davis, E.L.; Jones, J.T.; Goverse, A.; Bakker, J.; Smant, G. (2009) Identification and characterization of the most abundant cellulases in stylet secretions from Globodera rostochiensis., Phytopathology, 99, 194-202.
• Regeai, S.O.; Dolan, K.M.; Fitzpatrick, D.A.; Browne, J.A.; Jones, J.T.; Burnell, A.M. (2009) Novel primers for the amplification of nuclear DNA introns in the entomopathogenic nematode Heterorhabditis bacteriophora and their cross-amplification in seven other Heterorhabditis species., Molecular Ecology Resources, 9, 421-424.
• Rosso, M.N.; Jones, J.T.; Abad, P. (2009) RNAi and functional genomics in plant parasitic nematodes., Annual Review of Phytopathology, 47, 207-232.
• Abad, P.; Gouzy, J.; Aury, J.M.; Castagnone-Sereno, P.; Danchin, E.G.J.; Deleury, E.; Perfus-Barbeoch, L.; Anthouard, V.; Artiguenave, F.; Blok, V.C.; Caillaud, M.C.; Coutinho, P.M.; Dasilva C.; De Luca, F.; Deau, F.; Esquibet, M.; Flutre, T.; Goldstone, J.V.; Hamamouch, N.; Hewezi, T.; Jaillon, O.; Jubin, C.; Leonetti, P.; Magliano, M.; Maier, T.R.; Markov, G.V.; McVeigh, P.; Pesole, G.; Poulain J.; Robinson-Rechavi, M.; Sallet, E.; Segurens, B.; Steinbach, D.; Tytgat, T.; Ugarte, E.; van Ghelder, C.; Veronico, P.; Baum, T.J.; Blaxter, M.; Bleve-Zacheo, T.; Davis, E.L.; Ewbank, J.J.; Favery, B.; Greiner, E.; Henrissat, B.; Jones, J.T.; Laudet, V.; Maule, A.G.; Quesneville, H.; Rosso, M.N.; Schiex, T.; Smant, G.; Weissenbach, J.; Wincker, P.; (2008) Genome sequence of the metazoan plant-parasitic nematode Meloidogyne incognita., Nature Biotechnology, 26, 909-915.
• Adam, M.A.M.; Phillips, M.S.; Jones, J.T.; Blok, V.C. (2008) Characterisation of the cellulose binding protein Mj-cbp-1 of the root knot nematode, Meloidogyne javanica., Physiological and Molecular Plant Pathology, 72, 21-28.
• Jones, J.T.; Moens, M.; Mota, M.; Li, H.M.; Kikuchi, T. (2008) Bursaphelenchus xylophilus: opportunities in comparative genomics and molecular host-parasite interactions (Review)., Molecular Plant Pathology, 9, 357-368.
• Blok, V.C.; Jones, J.T.; Phillips, M.S.; Trudgill, D.L. (2008) Parasitism genes and host range disparities in biotrophic nematodes: the conundrum of polyphagy versus specialisation., Bioessays, 30, 249-259.
• Nisbet, A.J.; Redmond, D.L.; Matthews, J.B.; Watkins, C.; Yaga, R.; Jones, J.T.; Nath, M.; Knox, D.P. (2008) Stage-specific gene expression in Teladorsagia circumcincta (Nematoda: Strongylida) infective larvae and early parasitic stages., International Journal for Parasitology, 38, 829-838.
• Valentine, T.A.; Randall, E.; Wypijewski, K.; Chapman, S.N.; Jones, J.T.; Oparka, K.J. (2007) Delivery of macromolecules to plant parasitic nematodes using a tobacco rattle virus vector., Plant Biotechnology Journal, 5, 827-834.
• Jones, J.T.; Furlanetto, C.; Phillips, M. (2007) The role of flavonoids produced in response to cyst nematode infection of Arabidopsis thaliana., Nematology, 9, 671-677.
• Kikuchi, T.; Aikawa, T.; Kosaka, H.; Pritchard, L.; Ogura, N.; Jones, J.T. (2007) Expressed sequence tag (EST) analysis of the pine wood nematode Bursaphelenchus xylophilus and B. mucronatus., Molecular and Biochemical Parasitology, 155, 9-7.
• Blok, V.C.; Chapman, S.N.; Armstrong, M.R.; Phillips, M.; Lilley, C.; Urwin, P.; Blanchard, A.; Grenier, E.; Jones, J.T. (2006) Genomics analysis in the potato cyst nematode Globodera pallida., Phytopathology, 96, S149.
• Kikuchi, T.; Shibuya, H.; Aikawa, T.; Jones, J.T. (2006) Cloning and characterization of pectate lyases expressed in the esophageal gland of the pine wood nematode Bursaphelenchus xylophilus., Molecular Plant-Microbe Interactions, 19, 280-287.
• He, Y.; Jones, J.T.; Armstrong, M.R.; Lamberti, F.; Moens, M. (2005) The mitochondrial genome of Xiphinema americanum sensu stricto (Nematoda: Enoplea):considerable economization in the length and structural features of encoded genes., Journal of Molecular Evolution, 61, 819-833.
• Jones, J.T.; Furlanetto, C.; Kikuchi, T. (2005) Horizontal gene transfer from bacteria and fungi as a driving force in the evolution of plant parasitism in nematodes., Nematology, 7, 641-646.
• Chen, Q.; Rehman, S.; Smant, G.; Jones, J.T. (2005) Functional analysis of pathogenicity proteins of the potato cyst nematode Globodera rostochiensis using RNAi., Molecular Plant-Microbe Interactions, 18, 621-625.
• Kikuchi, T.; Shibuya, H.; Jones, J.T. (2005) Molecular and biochemical characterization of an endo-b-1,3-glucanase from the pinewood nematode Bursaphelenchus xylophilus acquired by horizontal gene transfer from bacteria., Biochemical Journal, 389, 117-125.
• Furlanetto, C.; Cardle, L.; Brown, D.J.F.; Jones, J.T. (2005) Analysis of Expressed Sequence Tags from the ectoparasitic nematode Xiphinema index., Nematology, 7, 95-104.
• Fanelli, E.; Di Vito, M.; Jones, J.T.; De Giorgi, C. (2005) Analysis of chitin synthase function in a plant parasitic nematode, Meloidogyne artiellia, using RNAi., Gene, 349, 87-95.
• Whisson, S.C.; Avrova, A.O.; van West, P.; Jones, J.T. (2005) A method for double-stranded RNA-mediated transient gene silencing in Phytophthora infestans., Molecular Plant Pathology, 6, 153-163.
• Jones, J.T.; Perry, R.N. (2004) Plant parasitic nematodes – more than a microscopic problem., The Biologist, 51, 155-159.
• Kikuchi, T.; Jones, J.T.; Aikawa, T.; Kosaka, H.; Ogura, N. (2004) A family of glycosyl hydrolase family 45 cellulases from the pine wood nematode Bursaphelenchus xylophilus., FEBS Letters, 572, 201-205.
• Qin, L.; Kudla, U.; Roze, E.H.A.; Goverse, A.; Popeijus, H.; Nieuwland, J.; Overmars, H.; Jones, J.T.; Schots, A.; Smant, G.; Bakker, J.; Helder, J. (2004) Plant degradation: a nematode expansion acting on plants., Nature, 427, 30.
• Jones, J.T.; Reavy, B.; Smant, G.; Prior, A.E. (2004) Glutathione peroxidases of the potato cyst nematode Globodera rostochiensis., Gene, 324, 47-54.

Books / chapters

• Smant, G.; Jones, J.T. (2011) Suppression of plant defences by nematodes., In: Jones, J.T., Gheysen, G. & Fenoll, C. (eds.). Genomics and Molecular Genetics of Plant-Nematode Interactions. Springer, Dordrecht, The Netherlands, Chapter 13, 273-286.
• Jones, J.T.; Gheysen, G.; Fenoll, C. (eds.) (2011) Genomics and molecular genetics of plant-nematode interactions., Springer, Dordrecht, The Netherlands, 557pp. ISBN: 978-94-007-0433-6
• Curtis, R.H.C.; Jones, J.T.; Davies, K.G.; Sharon, E.; Spiegel, Y. (2011) Plant nematode surfaces., In: Davies, K.G. & Spiegel, Y. (eds.). Biological Control of Plant Parasitic Nematodes: Building Coherence Between Microbial Ecology and Molecular Mechanisms. Springer Academic Publishers, 115-144.
• Gheysen, G.; Jones, J.T. (2006) Molecular aspects of plant-nematode interactions., In: Perry, R.N. & Moens, M. (eds.). Plant Nematology. CABI Publishing, Wallingford, Oxon, pp234-254.
• Jones, J.T. (2002) Nematode sense organs., In: Lees, D.L. (ed.). The Biology of Nematodes. Taylor and Francis, London, pp353-368.
• Jones, J.T. (2001) Parasites of crops: Potato cyst nematode (PCN) Globodera pallida (Nematoda)., In: Halton, D.W., Behnke, J.M. & Marshall, I. (eds.). Practical Exercises in Parasitology. Cambridge University Press, Chapter 1.7, pp63-72.

Technical / contract reports

• Avrova, A.O.; Birch, P.R.J.; Hein, I.; Jones, J.T.; Pritchard, L. (2010) Functional analysis of pathogen effectors: how to go from genomics to durable resistance., Annual Report of the Scottish Crop Research Institute for 2009, 39-41.
• Wale, S.; Inglis, M.; Bain, R.; Davey, T.; Evans, A.; Bradshaw, J.E.; Phillips, M.; Jones, J.T.; Fenton, B.; Cooke, D.E.L.; Ramsay, G. (2008) Welcome to the Potatoes in Partnership open meetings 2008 which form part of knowledge transfer activities for RERAD funded research., SAC Information Note 105
• Jones, J.T.; Phillips, M.S.; Blok, V.C. (2008) Potato cyst nematode genomics., Annual Report of the Scottish Crop Research Institute for 2007, pp26-27.
• Whisson, S.C.; Avrova, A.O.; Birch, P.R.J.; Adam, M.; Blok, V.C.; Jones, J.T. (2004) Functional genomic tools for the major eukaryotic pathogens of potato., Annual Report of the Scottish Crop Research Institute for 2003/2004, pp127-128.
• Whisson, S.C.; Avrova, A.O.; Armstrong, M.R.; Jones, J.T.; Venter, E.; Birch, P.R.J. (2004) Targeting late blight with gene discovery., Annual Report of the Scottish Crop Research Institute for 2002/2003, pp102-103.
• Blok, V.C.; Armstrong, M.R.; Banks, B.; Birch, P.R.J.; Bryan, G.J.; Castelli, L.; Jones, J.T.; Kumar, A.; Phillips, M.S.; Purvis, A.; Ramsay, G.; Waugh, R.; Wishart, J. (2002) Investigating gene expression in nematode-infected roots., Annual Report of the Scottish Crop Research Institute for 2001/2002, pp122-124.

Conference papers

• Lilley, C.J.; Berriman, M.; Jones, J.T.; Blok, V.C.; Kerry, B.R.; Hunt, M.; Urwin, P. (2010) The genome sequence of Globodera pallida and its utilisation for improved control., 3rd Symposium on Potato Cyst Nematodes, Harper Adams University College, Newport, 14-15 September 2010 (Talk).
• Robertson, L.; Radhakrishnan, R.; Cock, P.J.A.; Blok, V.C.; Smith, A.; Grenier, E.; Hunt, M.; Berriman, M.; Jones, J.T. (2010) Functional analysis of pioneer effectors from plant parasitic nematodes., 4th Annual Meeting of COST 872 Nemagenics: Exploiting genomics to understand plant-nematode interactions, Lisbon, Portugal, 24-27 May 2010.
• Thorpe, P.; Blok, V.C.; Pylypenko, L.A.; Urwin, P.; Jones, J.T. (2010) Functional analysis of Globodera pallida effector similar to ubiquitin extension proteins., 4th Annual Meeting of COST 872 Nemagenics: Exploiting genomics to understand plant-nematode interactions, Lisbon, Portugal, 24-27 May 2010.
• Blok, V.C.; Phillips, M.S.; Jones, J.T. (2008) UK PCN research., State of Victoria, Department of Primary Industries, Marysville, Victoria, Australia, 21-22 July 2008.
• Mulroy-Hehir, Z.; Jones, J.T.; Burnell, A. (2005) Isolation and characterisation of genes expressed during the early stages od insect infection by Steinernema carpocapsae., AAB Advances in Nematology. London, 13 December 2005.
• Chen, Q.; Jones, J.T. (2004) Functional analysis of secreted proteins of plant parasitic nematodes using RNAi., European Society of Nematologists Meeting, Rome, 14-18 June 2004.
• Birch, P.R.J.; Blok, V.C.; Phillips, M.; Jones, J.T.; Stewart, H.E.; Duncan, J.M.; Bryan, G.J.; Waugh, R.; Lyon, G.D.; MacFarlane, S.A.; Avrova, A.O.; Whisson, S.C.; Toth, I.K. (2003) Current and future research at SCRI on the molecular genetics of the interactions between potato and its major pathogens., Acta Horticulturae, 619, 95-119.
• Holeva, R.C.; Chen, Q.; Neilson, R.; Jones, J.T.; Brown, D.J.F. (2001) Lectin attachment to Paratrichodorus anemones (Nematoda)., Proceedings of the Potato Association of America Meeting, St. Augustine, Florida, USA, 22-26 April 2001.
• Jones, J.T.; Blok, V.C.; Popeijus, H.; Prior, A.E.; Phillips, M.S.; Smant, G. (2001) ESTs (expressed sequence tags) and parasitism – sequences and function., EU COST 819 Proceedings, Luxembourg, 228-237.
• Holeva, R.C.; Chen, Q.; Neilson, R.; Jones, J.T.; Brown, D.J.F. (2000) Screening of selected lectins for attachment to Paratrichodorus anemones (Nematoda:Trichodoridae)., Association of Applied Biologists, Offered Papers in Nematology, Linnean Society of London, 12 December 2000.
• Jones, J.T.; Blair, L.; Sobczak, M.; Clot, N.; Perry, R.N. (1999) Up-regulation of host and parasite genes during the life-cycle of cyst nematodes., Abstracts of the BSP Spring Meeting, Warwick, 68.

Conference posters / abstracts

• Thorpe, P.; Jones, J.T.; Mantelin, S.; Coke, M.; Lilley, C.J.; Urwin, P. (2011) Characterization of effectors from the potato cyst nematode Globodera pallida., Final Meeting of COST 872 Exploiting Genomics to Understand Plant-Nematode Interactions, held in association with the 63rd International Symposium on Crop Protection, Ghent, Belgium, May 2011. (Poster)
• Blok, V.C.; Cock, P.J.A.; Hunt, M.; Hedley, P.E.; Morris, J.; Jones, J.T. (2010) Investigations of the expression of the multipartite mtDNA of Globodera pallida., 4th Annual Meeting of COST 872 Nemagenics: Exploiting genomics to understand plant-nematode interactions, Lisbon, Portugal, 24-27 May 2010 (Poster).
• Blok, V.C.; Cock, P.J.A.; Hunt, M.; Hedley, P.E.; Morris, J.; Jones, J.T. (2010) Investigations of the expression of the multipartite mtDNA of Globodera pallida., Society of Nematologists Annual Meeting, Boise, Idaho, USA, 11-14 July 2010 (Poster).
• Jones, J.T.; Phillips, M.; Blok, V.C. (2007) Functional characterisation of secreted proteins of the potato cyst nematode Globoderra pallida., Advances in Nematology AAB 2007, London, 11 December 2007 (Abstract).
• Blok, V.C.; Phillips, M.S.; Booth, A.; Smith, A.; Holt, A.; Gilroy, E.M.; Jones, J.T. (2007) Chorismate mutases of Globodera pallida: genetic and functional characterisation., XIII International Congress on Molecular Plant-Microbe Interactions, Sorrento, Italy, 22-26 July 2007 (Abstract).
• Holeva, R.C.; Chen, Q.; Curtis, R.; Neilson, R.; Jones, J.T.; Blok, V.C.; Brown, D.J.F. (2002) Magnetic separation as a tool in a sample preparation procedure for direct detection and quantification of trichodorid nematodes., Nematology, 4, 161-162.
• Chen, Q.; Curtis, R.H.; Lamberti, F.; Mones, M.; Brown, D.J.F.; Jones, J.T. (2002) Using monoclonal antibodies to discover parasitism proteins from the virus-vector nematode Xiphinema index., Fourth International Congress of Nematology Programme and Abstracts,Tenerife, Canary Islands, Spain, 8-13 June 2002. 217.
• Armstrong, M.R.; Banks, B.; Birch, P.R.J.; Jones, J.T.; Phillips, M.S.; Wishart, J.; Blok, V.C. (2001) Comparisons of incompatible and compatible plant-parasitic nematode/host interactions., MPMI ’01 Conference, Madison, Wisconsin, 10-14 July 2001 (Abstract).
• Jones, J.T.; Blok, V.C.; Popeijus, H.; Robertson, L.; Prior, A.E.; Phillips, M.S.; Smant, G. (2000) Characterisation of secreted proteins of Globodera rostochiensis., Abstracts of the 39th Annual Meeting of the Society of Nematologists, Quebec, Canada, 24-28 June 2000.
• Armstrong, M.R.; Banks, B.; Birch, P.R.J.; Jones, J.T.; Phillips, M.S.; Wishart, J.; Blok, V.C. (2000) Interactions between host roots and plant-parasitic nematodes., British Society of Plant Pathology Presidential Meeting, Wye, Kent, 18-20 December 2000. (Abstract).
• Wishart, J.; Blok, V.C.; Jones, J.T.; Phillips, M.S. (2000) Diagnostics for distinguishing Meloidogyne chitwoodi and M. fallax from other root-knot nematodes., Abstracts of the 39th Annual Meeting of the Society of Nematologists, Quebec, Canada, 24-28 June 2000.
• Blok, V.C.; Phillips, M.S.; Armstrong, M.R.; Jones, J.T.; Trudgill, D.L. (2000) Prospects for managing Globodera pallida., 39th Annual Meeting of the Society of Nematologists, Quebec, Canada, 24-28 June 2000 (Abstract).
• Jones, J.T.; Blok, V.C.; Prior, A.E.; Phillips, M.S.; Popeijus, H.; Bakker, E.; Helder, H.; Smant, G. (2000) ESTs from potato cyst nematodes – from sequences to functional analysis., Nematology, 2, 765.
• Blok, V.C.; Boutsika, K.; Castelli, L.; Phillips, M.S.; Smant, G.; Jones, J.T. (2000) Neuropeptide type sequences and activities in Globodera spp., 25th International Nematology Symposium, Herzliya, Israel, 2-7 April 2000. Nematology, 2, 745.
• Wishart, J.; Blok, V.C.; Jones, J.T.; Phillips, M.S. (2000) Development of diagnostics for distinguishing Meloidogyne chitwoodi and M. fallax from other root-knot nematodes., Nematology, 2, 799.
• Jones, J.T.; Robertson, L.; Prior, A.E.; Knox, D.; Phillips, M.S. (2000) Antioxidant proteins of Globodera rostochiensis., Nematology, 2, p764. Abstract
• Prior, A.E.; Kennedy, M.W.; Blok, V.C.; McDermott, L.; Cooper, A.; Jones, J.T. (1999) Functional analysis of a nematode lipid binding protein using site-directed mutagenesis., Association of Applied Biologists, Offered Papers in Nematology, Linnean Society, London (Abstract).
• Chen, Q.; Robertson, L.; Jones, J.T.; Blok, V.C.; Phillips, M.S.; Brown, D.J.F. (1999) Magnetic capture of nematodes using antiserum and lectin coated dynabeads., Abstracts of the AAB Offered Papers in Nematology Meeting, Linnean Society, London (Abstract).
• Jones, J.T.; Blok, V.C.; Bakker, E.; Popeijus, H.; Helder, J.; Phillips, M.S.; Smant, G. (1999) ESTs from PCN – sequences and function., Abstracts of the AAB Offered Papers in Nematology Meeting, Linnean Society, London (Abstract).
• Robertson, L.; Robertson, W.M.; Ferguson, M.A.J.; Stokkermans, J.; Jones, J.T. (1999) Characterisation of the secretions of the potato cyst nematode Globodera rostochiensis., Abstracts of the BSP Spring Meeting, Warwick, 87.