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2014
del Toro F, Fernandez FT, Tilsner J, Wright KM, Tenllado F, Chung BN, Praveen S, Canto T.  2014.  Potato virus Y HCPro localization at distinct, dynamically related and environment-influenced structures in the cell cytoplasm. Molecular Plant-Microbe Interactions. 27:1331-1343.
Avery LM, Anchang KY, Tumwesige V, Strachan N, Goude PJ.  2014.  Potential for pathogen reduction in anaerobic digestion and biogas generation in Sub-Saharan Africa. Biomass and Bioenergy. 70:112-124.
Smith J, Avery L.  2014.  The potential for small-scale biogas digesters in Sub-Saharan Africa to improve sustainable rural livelihoods. Biomass and Bioenergy. 70:1-3.
Henry MK, Tongue SC, Evans J, Webster C, McKendrick IJ, Gunn GJ.  2014.  The potential of chlorhexidine lavage to reduce the shedding of VTEC 0157 from cattle. Cattle Practice. 22:280-280.
Feliciano D, Slee B, Smith P.  2014.  The potential uptake of domestic woodfuel heating systems and its contribution to tackling climate change: A case study from the North East Scotland. Renewable Energy. 72:344-353.
Aitkenhead M, Coull MC, Dawson LA.  2014.  Predicting sample source location from soil analysis using neural networks. Environmental Forensics. 15:281-292.
Hudson LN, Newbold T, Contu S, Hill SLL, Lysenko I, De Palma A, Phillips HRP, Senior RA, Bennett DJ, Booth H et al..  2014.  The PREDICTS database: a global database of how local terrestrial biodiversity responds to human impacts. Ecology and Evolution. 4:4701-4735.
Holden NJ, Wright F, MacKenzie K, Marshall J, Mitchell S, Mahajan A, Wheatley R, Daniell TJ.  2014.  Prevalence and diversity of Escherichia coli isolated from a barley trial supplemented with bulky organic soil amendments: green compost and bovine slurry. Letters in Applied Microbiology. 58:205-212.
Ribeiro KM, Braga RA, Horgan GW, Ferreira DD, Safadi T.  2014.  Principal component analysis in the spectral analysis of the dynamic laser speckle patterns. Journal of the European Optical Society - Rapid Publications. 9:ArticleNo.14009.
Velmala SM, Rajala T, Heinonsalo J, Taylor AFS, Pennanen T.  2014.  Profiling functions of ectomycorrhizal diversity and root structuring in seedlings of Norway spruce (Picea abies) with fast- and slow-growing phenotypes. New Phytologist. 201:610-622.
Hemsley PA.  2014.  Progress in understanding the mechanisms and functional importance of protein-membrane interactions in plants. New Phytologist. 204:741-743.
Gebreegziabher Z, Naik L, Melamu R, Balana BB.  2014.  Prospects and challenges for urban application of biogas installations in Sub-Saharan Africa. Biomass and Bioenergy. 70:130-140.
Bengtsson T, Weighill D, Proux-Wera E, Levander F, Resjo S, Burra DD, Moushib LI, Hedley PE, Liljeroth E, Jacobson D et al..  2014.  Proteomics and transcriptomics of BABA-induced resistance response in potato using a novel functional annotation approach. BMC Genomics. 15
Fischer A, Selge S, van der Wal R, Larson B.  2014.  The public and professionals reason similarly about the management of non-native invasive species: a quantitative investigation of the relationship between beliefs and attitudes. PLoS ONE. 9:e105495.
Rhee YJ, Hillier S, Pendlowski H, Gadd GM.  2014.  Pyromorphite formation in a fungal biofilm community growing on lead metal. Environmental Microbiology. 16:1441-1451.
2013
Arnold MFF, Haag AF, Capewell S, Boshoff HI, James EK, McDonald R, Mair I, Mitchell AM, Kerscher B, Mitchell TJ et al..  2013.  Partial complementation of Sinorhizobium meliloti bacA mutant phenotypes by the Mycobacterium tuberculosis BacA protein. Journal of Bacteriology. 195:389-398.
Chianini F, Siso S, Ricci E, Eaton SL, Finlayson J, Pang Y, Hamilton S, Steele P, Reid HW, Cantile C et al..  2013.  Pathogenesis of scrapie in ARQ/ARQ sheep after subcutaneous infection: Effect of lymphadenectomy and immune cell subset changes in relation to prion protein accumulation. Veterinary Immunology and Immunopathology. 152:348-358.
Ding Z, Feeley KJ, Wang Y, Pakeman RJ, Ding P.  2013.  Patterns of bird functional diversity on land-bridge island fragments. Journal of Animal Ecology. 82:781-790.
Martin-Ortega J, Ojea E, Roux C.  2013.  Payments for Water Ecosystem Services in Latin America: a literature review and conceptual model. Ecosystem Services. 6:122-132.
Suryawanshi KR, Bhatnagar YV, Redpath S, Mishra C.  2013.  People, predators and perceptions: patterns of livestock depredation by snow leopards and wolves. Journal of Applied Ecology. 50:550-560.
Hombach-Klonisch S, Danescu A, Begum F, Amezaga MR, Rhind SM, Sharpe RM, Evans NP, Bellingham M, Cotinot C, Mandon-Pepin B et al..  2013.  Peri-conceptional changes in maternal exposure to sewage sludge chemicals disturbs fetal thyroid gland development in sheep. Molecular and Cellular Endocrinology. 367:98-108.
Skelsey P, With KA, Garrett KA.  2013.  Pest and disease management: Why we shouldn't go against the grain. PLoS ONE. 8:e75892.
Canton GJ, Katzer F, Benavides-Silvan J, Maley SW, Palarea-Albaladejo J, Pang Y, Smith S, Bartley PM, Rocchi M, Innes EA et al..  2013.  Phenotypic characterisation of the cellular immune infiltrate in placentas of cattle following experimental inoculation with Neospora caninum in late gestation. Veterinary Research. 44
Vetukuri RR, Asman AKM, Jahan SN, Avrova AO, Whisson SC, Dixelius C.  2013.  Phenotypic diversification by gene silencing in Phytophthora plant pathogens. Communicative and Integrative Biology. 6:e25890.
Nuhn ME, Binder M, Taylor AFS, Halling RE, Hibbett DS.  2013.  Phylogenetic overview of the Boletineae. Fungal Biology. 117:479-511.
Jupe J, Stam R, Howden AJM, Morris JA, Zhang R, Hedley PE, Huitema E.  2013.  Phytophthora capsici-tomato interaction features dramatic shifts in gene expression associated with a hemi-biotrophic lifestyle. Genome Biology. 14:R63.
Makarov V, Rakitina D, Protopopova A, Yaminsky I, Arutiunian A, Love AJ, Taliansky M, Kalinina N.  2013.  Plant coilin: structural characteristics and RNA-binding properties. PLoS ONE. 8:e53571.
Trinder CJ, Brooker RW, Robinson D.  2013.  Plant ecology's guilty little secret: understanding the dynamics of plant competition. Functional Ecology. 27:918-929.
Sainz M, Perez-Rontome C, Ramos J, Mulet J, James E, Bhattacharjee U, Petrich J, Becana M.  2013.  Plant hemoglobins can be maintained in functional form by reduced flavins in the nuclei and confer differential tolerance to nitro-oxidative stress. The Plant Journal. 76:875-887.
Turner TR, James EK, Poole P.  2013.  The plant microbiome. Genome Biology. 14:209.
Lewandowska D, Ten Have S, Hodge K, Tillemans V, Lamond AI, Brown JWS.  2013.  Plant SILAC: Stable-isotope labelling with amino acids of arabidopsis seedlings for quantitative proteomics. PLoS ONE. 8:e72207.
Mladek J, Mladkova P, Hehcmanova P, Dvorsky M, Pavlu V, de Bello F, Duchoslav M, Hejeman M, Pakeman RJ.  2013.  Plant trait assembly affects superiority of grazer's foraging strategies in species-rich grasslands. PLoS ONE. 8:e69800.
Aslam TJ, Johnson SN, Karley AJ.  2013.  Plant-mediated effects of drought on aphid population structure and parasitoid attack rates. Journal of Applied Entomology. 137:136-145.
Raven JA.  2013.  Polar auxin transport in relation to long-distance transport of nutrients in the Charales. Journal of Experimental Botany. 64:1-9.
Arts K, Fischer A, van der Wal R.  2013.  Political decision-making, governance shifts and Scottish animal reintroductions: are democratic principles at stake? Journal of Environmental Planning and Management. 57:612-628.
Dahlawi H, Jordan-Mahy N, Clench M, McDougall GJ, Le Maitre CL.  2013.  Polyphenols are responsible for the pro-apoptotic properties of pemegranate juice on leukemia cell lines. Food Science & Nutrition. 1:196-208.
Czachor H, Hallett PD, Lichner L, Jozefaciuk G.  2013.  Pore shape and organic compounds drive major changes in the hydrological characteristics of agricultural soils. European Journal of Soil Science. 64:334-344.
Lilly A, Baggaley NJ.  2013.  The potential for Scottish cultivated top soils to lose or gain soil organic carbon. Soil Use and Management. 29:39-47.
Aitkenhead MJ, Coull MC, Towers W, Hudson G.  2013.  Prediction of soil characteristics and colour using data from the National Soils Inventory of Scotland. Geoderma. 200-201:99-107.
Chavarria-Krauser A, Dupuy L, Ptashnyk M.  2013.  Preface. Mathematical Modelling of Natural Phenoma. 8:1-4.
Bengough AG, White PJ.  2013.  Preface: Future roots of productivity. Journal of Experimental Botany. 64:1179.
Ghee C, Neilson R, Hallett PD, Robinson D, Paterson E.  2013.  Priming of soil organic matter mineralisation is intrinsically insensitive to temperature. Soil Biology and Biochemistry. 66:20-28.
Yeretzian C, Pascual EC, Goodman BA.  2013.  Probing free radical processes during storage of extracts from whole roasted coffee beans: impact of O-2 exposure during extraction and storage. Journal of Agricultural and Food Chemistry. 61:3301-3305.
Senapati N, Smith P, Wilson B, Yeluripati JB, Daniel H, Lockwood P, Ghosh S.  2013.  Projections of changes in grassland soil organic carbon under climate change are relatively insensitive to methods of model initialization. European Journal of Soil Science. 64:229-238.
Beale CM, Baker NE, Brewer M, Lennon JJ.  2013.  Protected area networks and savannah bird biodiversity in the face of climate change and land degradation. Ecology Letters. 16:1061-1068.
Griffiths BS, Bracewell JM, Robertson GW, Bignell DE.  2013.  Pyrolysis-mass spectrometry confirms enrichment of lignin in the faeces of a wood-feeding termite, Zootermopsis nevadensis and depletion of peptides in a soil-feeder, Cubitermes ugandensis. Soil Biology and Biochemistry. 57:957-959.
2012
Davies AL.  2012.  Palaeo-environments and human experience. Archaeological Dialogues. 19:51-54.
Marion G, McInerny GJ, Pagel J, Catterall S, Cook AR, Hartig F, O'Hara RB.  2012.  Parameter and uncertainty estimation for process-oriented population and distribution models: data, statistics and the niche. Journal of Biogeography. 39:2225-2239.
Zhan J, Yang L, Zhu W, Newton AC.  2012.  Pathogen populations evolve to greater race complexity in agricultural systems - evidence from analysis of Rhynchosporium secalis virulence data. PLoS ONE. 7:e38611.
Chase-Topping ME, Rosser T, Allison LJ, Courcier, Evans J, McKendrick IJ, Pearce MC, Handel I, Caprioli A, Karch H et al..  2012.  Pathogenic potential to humans of bovine Escherichia coli O26, Scotland. Emerging Infectious Diseases. 18:439-448.
Zetsche E, Bulling MT, Witte U.  2012.  Permeability of intertidal sandflats: Impact of temporal variability on sediment metabolism. Continental Shelf Research. 42:41-50.
Brown EM, McDougall GJ, Stewart D, Pereira Caro G, Gonzalez-Barrio R, Allsopp P, Magee P, Crozier A, Rowland I, Gill CIR.  2012.  Persistence of anticancer activity in berry extracts after simulated gastrointestinal digestion and colonic fermentation. PLoS ONE. 7:e49740.
Greer E, Martin AC, Pendle A, Colas I, Jones AME, Moore G, Shaw P.  2012.  The Ph1 locus suppresses Cdk2-type activity during premeiosis and meiosis in wheat. The Plant Cell. 24:152-162.
Burthe S, Daunt F, Butler A, Elston DA, Frederiksen M, Johns D, Newell M, Thackeray SJ, Wanless S.  2012.  Phenological trends and trophic mismatch across multiple levels of a North Sea pelagic food web. International Journal of Plant Genomics. 454:119-133.
Roberts WM, Stutter MI, Haygarth PM.  2012.  Phosphorus retention and remobilization in vegetated buffer strips: a review. Journal of Environmental Quality. 41:389-399.
McIntosh FM, Maison N, Holtrop G, Young P, Stevens VJ, Ince J, Johnstone AM, Lobley GE, Flint HJ, Louis P.  2012.  Phylogenetic distribution of genes encoding beta-glucuronidase activity in human colonic bacteria and the impact of diet on faecal glycosidase activities. Environmental Microbiology. 14:1876-1887.
Mayer KFX, Waugh R, Langridge P, Close TJ, Wise RP, Graner A, Matsumoto T, Sato K, Schulman A, Muehlbauer GJ et al..  2012.  A physical, genetic and functional sequence assembly of the barley genome. Nature. 491:711-716.
Wallace JM, Horgan GW, Bhattacharya S.  2012.  Placental weight and efficiency in relation to maternal body mass index and the risk of pregnancy complications in women delivering singleton babies. Placenta. 33:611-618.
Chichkova NV, Tuzhikov AI, Taliansky ME, Vartapetian AB.  2012.  Plant phytaspases and animal caspases: structurally unrelated death proteases with a common role and specificity. Physiologia Plantarum. 145:77-84.
Kerchev P, Fenton B, Foyer CH, Hancock RD.  2012.  Plant responses to insect herbivory: interactions between photosynthesis, reactive oxygen species and hormonal signalling pathways (Review). Plant Cell and Environment. 35:441-453.
Cowan GH, Roberts AG, Chapman SN, Ziegler A, Savenkov EI, Torrance L.  2012.  The potato mop-top virus TGB2 protein and viral RNA associate with chloroplasts and viral infection induces inclusions in the plastids. Frontiers in Plant Science. 3
Vinh NC, Oborn I, Ha PQ, Minh ND, Hough RL, Khai NM, Thuy LT.  2012.  Potential environment and public health risk due to contamination of heavy metals from industrial waste water in Lam Thao, Phu Tho, Vietnam. American Journal of Environmental Sciences. 8:71-78.
Hartley IP, Garnett MH, Sommerkorn M, Hopkins DW, Fletcher BJ, Sloan VL, Phoenix GK, Wookey PA.  2012.  A potential loss of carbon associated with greater plant growth in the European Arctic. Nature Climate Change. 2:875-879.
Merz U, Lees AK, Sullivan L, Schwarzel R, Hebeisen T, Kirk HG, Bouchek-Mechiche K, Hofferbert HR.  2012.  Powdery scab resistance in Solanum tuberosum: an assessment of cultivar x environment effect. Plant Pathology. 61:29-36.
Gao W, Ren T, Bengough AG, Auneau L, Watts CW, Whalley WR.  2012.  Predicting penetrometer resistance from the compression characteristic of soil. Soil Science Society of America Journal. 76:361-369.
Aitkenhead MJ, Coull MC, Towers W, Hudson G, Black HIJ.  2012.  Predicting soil chemical composition and other soil parameters from field observations using a neural network. Computers and Electronics in Agriculture. 82:108-116.
Nielsen UN, Osler GHR, Campbell CD, Burslem DFRP, van der Wal R.  2012.  Predictors of fine-scale spatial variation in soil mite and microbe community composition differ between biotic groups and habitats. Pedobiologia. 55:83-91.
Slee B.  2012.  Present opportunities for sustainable and multifunctional forest management for the development of rural areas. L’Italia Forestale e Montana. 67:147-160.
Avery LM, Booth P, Campbell CD, Tompkins D, Hough RL.  2012.  Prevalence and survival of potential pathogens in source segregated green waste compost. Science of the Total Environment. 431:128-138.
Humphry RW, Bruelisauer F, McKendrick IJ, Nettleton PF, Gunn GJ.  2012.  Prevalence of antibodies to bovine viral diarrhoea virus in bulk tank milk and associated risk factors in Scottish dairy herds. Veterinary Record. 171:445..
Urquhart J, Courtney P, Slee W.  2012.  Private woodland owners' perspectives on multifunctionality in English woodlands. Journal of Rural Studies. 28:95-106.
Wheelhouse NM, Sait M, Aitchison K, Livingstone M, Wright F, McLean K, Inglis NF, Smith DGE, Longbottom D.  2012.  Processing of chlamydia abortus polymorphic membrane protein 18D during the chlamydial developmental cycle. PLoS ONE. 7:e49190.
Arts K, Fischer A, van der Wal R.  2012.  The promise of wilderness between paradise and hell: a cultural-historical exploration of a Dutch National Park. Landscape Research. 37:239-256.
Johnson SN, Young MW, Karley AJ.  2012.  Protected raspberry production alters aphid-plant interactions but not aphid population size. Agricultural and Forest Entomology. 14:217-224.
Bragg JG, Quigg A, Raven JA, Wagner A.  2012.  Protein elemental sparing and codon usage bias are correlated among bacteria. Molecular Ecology. 21:2480-2487.
Lloyd LJ, Foster T, Rhodes P, Rhind SM, Gardner DS.  2012.  Protein energy malnutrition during early gestation in sheep blunts fetal renal vascular and nephron development and compromises adult renal function. Journal of Physiology. 590:377-393.
Raven JA.  2012.  Protein turnover and plant RNA and phosphorus requirements in relation to nitrogen fixation. Plant Science. 188-189:25-35.
Hughes V, Garcia-Sanchez A, Smith S, McLean K, Lainson A, Nath M, Stevenson K.  2012.  Proteome-determined type-specific proteins of Mycobacterium avium subspecies paratuberculosis. Veterinary Microbiology. 158:153-162.
Bennett AE.  2012.  Pushing boundaries in above-belowground interactions. Functional Ecology. 26:305-306.
2011
McGavin WJ, Cock PJA, MacFarlane SA.  2011.  Partial sequence and RT-PCR diagnostic test for the plant rhabdovirus Raspberry vein chlorosis virus. Plant Pathology. 60:462-467.
Hoolahan A, Blok VC, Gibson T, Dowton M.  2011.  Paternal leakage of Mitochondrial DNA in experimental crosses of populations of the potato cyst nematode Globodera pallida. Genetica. 139:1509-1519.
Comadran J, Ramsay L, MacKenzie K, Hayes P, Close TJ, Muehlbauer G, Stein N, Waugh R.  2011.  Patterns of polymorphism and linkage disequilibrium in cultivated barley. Theoretical and Applied Genetics. 122:523-531.
Ross HA, Morris WL, Ducreux LJM, Hancock RD, Verrall SR, Morris JA, Tucker GA, Stewart D, Hedley PE, McDougall GJ et al..  2011.  Pectin engineering to modify product quality in potato. Plant Biotechnology Journal. 9:848-856.
Spezia L, Futter MN, Brewer MJ.  2011.  Periodic multivariate normal hidden Markov models for the analysis of water quality time series. Environmetrics. 22:304-317.
Smkal P, Kenicer G, Flavell AJ, Corander J, Kosterin O, Redden RJ, Ford R, Coyne CJ, Maxted M, Ambrose MJ et al..  2011.  Phylogeny, phylogeography and genetic diversity of the Pisum genus. Plant Genetic Resources. 9:4-18.
Peng X, Hallett PD, Zhang B, Horn R.  2011.  Physical response of rigid and non-rigid soils to analogues of biological exudates. European Journal of Soil Science. 62:676-684.
White PJ, Broadley MR.  2011.  Physiological limits to zinc biofortification of edible crops. Frontiers in Plant Science. 2:article80.
Bjorkman M, Klingen I, Birch ANE, Bones AM, Bruce T, Johansen T, Meadow R, Molmann J, Selijasen R, Smart L et al..  2011.  Phytochemicals of Brassicaceae in plant protection and human health - influences of climate, environment and agronomic practice. Phytochemistry. 72:538-556.
Vartapetian AB, Tuzhikov AI, Chichkova NV, Taliansky ME, Wolpert TJ.  2011.  A plant alternative to animal caspases: subtilisin-like proteases. Cell Death and Differentiation. 18:1289-1297.
Skiba MW, George TS, Baggs EM, Daniell TJ.  2011.  Plant influence on nitrification. Biochemical Society Transactions. 39:275-278.
Johnson SN, Staley JT, McLeod FAL, Hartley SE.  2011.  Plant-mediated effects of soil invertebrates and summer drought on above-ground multitrophic interactions. Journal of Ecology. 99:57-65.
Tilsner J, Amari K, Torrance L.  2011.  Plasmodesmata viewed as specialised membrane adhesion sites. Protoplasma. 248:39-60.
Veronico P, Melillo MT, Saponaro C, Leonetti P, Picardi E, Jones JT.  2011.  A polygalacturonase-inhibiting protein with a role in pea defence against the cyst nematode Heterodera goettingianna. Molecular Plant Pathology. 12:275-287.
Mattila PH, Hellstrom J, McDougall GJ, Dobson G, Pihlava JM, Tiirikka.T, Stewart D, Karjalainen RO.  2011.  Polyphenol and vitamin C content in European commercial blackcurrant juice products. Food Chemistry. 127:1216-1223.
Moloney PD, Hearne JW, Gordon IJ, McLeod S.  2011.  Portfolio optimisation techniques for a mixed-grazing scenario for Australia's rangelands. Natural Resource Modeling. 24:102-116.
Andrews M, Edwards GR, Ridgway HJ, Cameron KC, Di HJ, Raven JA.  2011.  Positive plant microbial interactions in perennial ryegrass dairy pasture systems. Annals of Applied Biology. 159:79-92.
Ross HA, Wright KM, McDougall GJ, Roberts AG, Chapman SN, Morris WL, Hancock RD, Stewart D, Tucker GA, James EK et al..  2011.  Potato tuber pectin structure is influenced by pectin methyl esterase activity and impacts on cooked potato texture. Journal of Experimental Botany. 62:371-381.
Elston DA, Nevison IM, Scott WA, Sier ARJ, Morecroft MD.  2011.  Power calculations for monitoring studies: a case study with alternative models for random variation. Environmetrics. 22:618-625.
Fox NJ, White PCL, McClean CJ, Marion G, Evans A, Hutchings MR.  2011.  Predicting impacts of climate change on Fasciola hepatica risk. PLoS ONE. 6:e16126.
Wojniusz S, Vogele C, Ropstad E, Evans N, Robinson J, Suetterlin S, Erhard HW, Solbakk AK, Endestad T, Oldberg DE et al..  2011.  Prepubertal gonadotropin-releasing hormone analog leads to exagerrated behavioral and emotional sex differences in sheep. Hormones and Behavior. 59:22-27.
DeGabriel JL, Albon SD, Fielding DA, Riach DJ, Westaway S, Irvine RJ.  2011.  The presence of sheep leads to increases in plant diversity and reductions in the impact of deer on heather. Journal of Applied Ecology. 48:1269-1277.
Gilroy EM, Breen S, Whisson SC, Squires J, Hein I, Kaczmarek M, Turnbull D, Boevink P, Lokossou A, Cano LM et al..  2011.  Presence/absence, differential expression and sequence polmorphisms between PiAVR2 and PiAVR2-like in Phytophthora infestans determine virulence on R2 plants. New Phytologist. 191:763-776.
Evans J, Knight H, McKendrick IJ, Stevenson H, Barbudo AV, Gunn GJ, Low JC.  2011.  Prevalence of Escherichia coli O157: H7 and serogroups O26, O103, O111 and O145 in sheep presented for slaughter in Scotland. Journal of Medical Microbiology. 60:653-660.
Coyle DR, Clark KE, Raffa KF, Johnson SN.  2011.  Prior host feeding experience influences ovipositional but not feeding preference in a polyphagous insect herbivore. Entomologia Experimentalis et Applicata. 138:137-145.
Poggio L, Soille P.  2011.  A probabilistic approach to river network detection in digital elevation models. Catena. 87:341-350.
Gontikaki E, Mayor DJ, Thornton B, Black K, Witte U.  2011.  Processing of 13C-labelled diatoms by a bathyal community at sub-zero temperatures. Marine Ecology Progress Series. 421:39-50.
Selge S, Fischer A, van der Wal R.  2011.  Public and professional views on invasive non-native species - a qualitative social scientific investigation. Biological Conservation. 144:3089-3097.
Nijnik M, Miller DR, Nijnik, M.; Mather A, Fiorini S, Vogt N, Brondizio E, Morrice JG.  2011.  Public participation for planning the sustainable use of natural resources and landscape changes. International Journal of Interdisciplinary Social Sciences. 5:303-320.
Moles AT, Wallis IR, Foley WJ, Warton DI, Bisigato AJ, Clark CJ, Cohen PS, Cornwell WK, Edwards EWR, Gonzales-Ojeda T et al..  2011.  Putting plant defences on the map: a test of the idea that plants are better defended at lower latitudes. New Phytologist. 191:777-788.
Donnelly RE, Katzner T, Gordon IJ, Gompper ME, Redpath S, Garner TWJ, Altwegg R, Reed DH, Acevedo-Whitehouse K, Pettorelli N.  2011.  Putting the eco back in ecotourism. Animal Conservation. 14:325-327.
2010
Newton AC, Fitt BDL, Atkins SD, Walters DR, Daniell TJ.  2010.  Pathogenesis, parasitism and mutualism in the trophic space of microbe-plant interactions. Trends in Microbiology. 18:365-373.
Mostowfizadeh-Ghalamfarsa R, Panabi F, Banihashemi Z, Cooke DEL.  2010.  Phylogenetic relationship of Phytophthora cryptogea Pethybr. & Laff and P. drechsleri Tucker. Fungal Biology. 114:325-339.
Duarte IM, De Almeida MTM, Brown DJF, Marques I, Neilson R, Decraemer W.  2010.  Phylogenetic relationships, based on SSU rDNA sequences, among the didelphic genera of the family Trichodoridae from Portugal. Nematology. 12:171-180.
Fleury D, Luo MC, Dvorak J, Ramsay L, Gill BS, Anderson OD, You FM, Schoaei Z, Deal KR, Langridge P.  2010.  Physical mapping of a large plant genome using global high-information-content-fingerprinting: the distal region of the wheat ancestor Aegilops tauschii chromosome 3DS. BMC Genomics. 11:-382.
Berry P, Spink J, Foulkes J, White PJ.  2010.  The physiological basis of genotypic differences in nitrogen use efficiency in oilseed rape (Brassica napus L.). Field Crops Research. 119:365-373.
Chichkova NV, Shaw J, Galiullina RA, Drury GE, Tuzhikov AI, Kim S-H, Kalkum M, Hong TB, Gorshkova EN, Torrance L et al..  2010.  Phytaspase, a relocalisable cell death promoting plant protease with caspase specificity. EMBO Journal. 29:1149-1161.
Bos JIB, Armstrong MR, Gilroy EM, Boevink P, Hein I, Taylor RM, Tian ZD, Engelhardt S, Vetukuri RR, Harrower BE et al..  2010.  Phytophthora infestans effector AVR3a is essential for virulence and manipulates plant immunity by stabilizing host E3 ligase CMPG1. Proceedings of the National Academy of Sciences, USA. 107:9909-9914.
Finkel ZV, Beardall J, Flynn KJ, Quigg A, Rees TAV, Raven JA.  2010.  Phytoplankton in a changing world: Cell size and elemental stoichiometry. Journal of Plankton Research. 32:119-137.
Bengough AG, Hans J, Bransby MF, Valentine TA.  2010.  PIV as a method for quantifying root cell growth and particle displacement in confocal images. Microscopy Research and Technique. 73:27-36. Abstract
Rietman H, Champouret N, Hein I, Niks RE, Vleeshouwers VGAA.  2010.  Plant and oomycetes, an intimate relationship: co-evolutionary principles and impact on agricultural practice. CAB Review. 58:1-17.
Lambers H, Brundett MC, Raven JA, Hopper SD.  2010.  Plant mineral nutrition in ancient landscapes: high plant species diversity on infertile soils is linked to functional diversity for nutritional strategies. Plant and Soil. 334:11-31.
White PJ, Brown PH.  2010.  Plant nutrition for sustainable development and global health. Annals of Botany. 105:1073-1080.
Hinojosa MB, Carreira JA, Garc R, Rodr JM, Daniell TJ, Griffiths BS.  2010.  Plant treatment, pollutant load and soil type effects in the rhizosphere ecology of trace element polluted soils. Ecotoxicology and Environmental Safety. 73:970-981. Abstract
Kim S-H, Spensley M, Choi SK, Calixto CPG, Pendle AF, Koroleva O, Shaw PJ, Brown JWS.  2010.  Plant U13 orthologues and orphan snoRNAs identified by RNomics of RNA from Arabidopsis nucleoli. Nucleic Acids Research. 38:3054-3067.
Lankau RA, Wheeler E, Bennett AE, Strauss SY.  2010.  Plant-soil feedbacks contribute to an intransitive competitive network that promotes both genetic and species diversity. Journal of Ecology. 99:176-185.
Loades KW, Bengough AG, Bransby MF, Hallett PD.  2010.  Planting density influence on fibrous root reinforcement of soils. Ecological Engineering. 36:276-284. Abstract
Holden N.  2010.  Plants as reservoirs for human enteric pathogens (Review). CAB Reviews: Perspectives in Agriculture, Veterinary Science, Nutrition and Natural Resources. 5, 047:1-11.
Tilsner J, Cowan GH, Roberts AG, Chapman SN, Ziegler A, Savenkov EI, Torrance L.  2010.  Plasmodesmal targeting and intercellular movement of Potato mop-top pomovirus is mediated by a membrane anchored tyrosine-based motif on the lumenal side of the endoplasmic reticulum and the C-terminal transmembrane domain in the TGB3 movement protein. Virology. 402:41-51.
Andrews M, Hodge S, Raven JA.  2010.  Positive plant microbial interactions. Annals of Applied Biology. 157:317-320.
Brulisauer F, Lewis FI, Ganser AG, McKendrick IJ, Gunn GJ.  2010.  The prevalence of bovine viral diarrhoea virus infection in beef suckler herds in Scotland. Veterinary Journal. 186:226-231.
Hotchkiss EJ, Dagleish MP, Willoughby K, McKendirck IJ, Finlayson J, Zadoks RN, Newsome E, Brulisauer F, Gunn GJ, Hodgson JC.  2010.  Prevalence of Pasteurella multocida and other respiratory pathogens in the nasal tract of Scottish calves. Veterinary Record. 167:555-560.
Gill CIR, McDougall GJ, Glidewell SM, Stewart D, Shen Q, Tuohy K, Dobbin A, Boyd A, Brown E, Haldar S et al..  2010.  Profiling of phenols in human faecal water after raspberry supplementation. Journal of Agricultural and Food Chemistry. 58:10389-10395.
Johnson SN, Petitjean S, Clark KE, Mitchell C.  2010.  Protected raspberry production accelerates onset of oviposition by vine weevils (Otiorhynchus sulcatus). Agricultural and Forest Entomology. 12:277-283.
Rotariu O, Smith-Palmer A, Cowden J, Bessell PR, Innocent GT, Reid SWJ, Matthews L, Dallas J, Ogden ID, Forbes KJ et al..  2010.  Putative household outbreaks of campylobacteriosis typically comprise single MLST genotypes. Epidemiology and Infection. 138:1744-1747.
Moore BD, Lawer IR, Wallis IR, Beale CM, Foley WJ.  2010.  Palatability mapping: a koala's eye view of spatial variation in habitat quality. Ecology. 91(11):3165-3176.
Msoffe F, Ogoto J, Bedelian C, Said M, Kifugo S, Reid R, Kaaya J, Neselle M, van Gardingen P, Thirgood SJ.  2010.  Participatory wildlife surveys in communal lands: a case study from Simanjiro, Tanzania. African Journal of Ecology. 8(3):727-735.
Andersen R, Rochefort L, Poulin M.  2010.  Peat, water and plant tissue chemistry monitoring: A seven-year case-study in a restored peatland. Wetlands. 30(1):159-170.
Michelena P, Jeanson R, Deneubourg JL, Sibbald AM.  2010.  Personality and collective decision-making in foraging herbivores. Proceedings of the Royal Society of London, B. 277(1684):1093-1099.
Senn HV, Swanson GM, Goodman SJ, Barton NH, Pemberton JM.  2010.  Phenotypic correlates of hybridisation between red and sika deer (genus Cervus). Journal of Animal Ecology. 79(2):414-425.
Johnson D, Anderson IC, Williams A, Whitlock R, Grime J.  2010.  Plant genotypic diversity does not beget root-fungal species diversity. Plant and Soil. 336(1-2):107-111.
Zhang ZL, Shanmugam M, Rhind SM.  2010.  PLE and GC-MS determination of polybrominated diphenyl ethers in soils. Chromatographia. 72(7-8):535-543.
Newey SJ, Allison P, Thirgood SJ, Smith AA, Graham IM.  2010.  Population and individual level effects of over-winter supplementary feeding mountain hares. Journal of Zoology. 282(3):214-220.
Turner TL, Bourne EC, von Wettberg EJ, Hu T, Nuzhdin SV.  2010.  Population resequencing reveals local adaptation of Arabidopsis lyrata to serpentine soils. Nature Genetics. 42:260-U42.
Lind PM, Oberg D, Larsson S, Kyle CE, Orberg J, Rhind SM.  2010.  Pregnant ewes exposed to multiple endocrine disrupting pollutants through sewage sludge-fertilised pasture show an anti-estrogenic effect in their trabecular bone. The Science of the Total Environment. 408:2340-2346.
Helliwell RC, Simpson GL.  2010.  The present is the key to the past, but what does the future hold for the recovery of surface waters from acidification? Water Research. 44(10):3166-3180.
Beechie TJ, Sear DA, Olden JD, Pess GR, Buffington JM, Moir HJ, Roni P, Pollock MM.  2010.  Process-based principles for restoring river ecosystems. BioScience. 60(3):209-222.
2009
Garnett MH, Hartley IP, Hopkins DW, Sommerkorn M, Wookey PA.  2009.  A passive sampling method for radiocarbon analysis of soil respiration using molecular sieve. Soil Biology & Biochemistry. 41:1450-1456. Abstract
Comadran J, Thomas WTB, van Eeuwijk FA, Ceccarelli S, Grando S, Stanca AM, Pecchioni N, Akar T, Al-Yassin A, Benbelkacem A et al..  2009.  Patterns of genetic diversity and linkage disequilibrium in a highly structured Hordeum vulgare association-mapping population for the Mediterranean basin. Theoretical and Applied Genetics. 119:175-187.
Raven JA, Beardall J, Flynn KJ, Maberly SC.  2009.  Phagotrophy in the origins of photosynthesis in eukaryotes and as a complementary mode of nutrition in phototrophs: relation to Darwin's insectivorous plants. Journal of Experimental Botany. 60:3975-3987.
Richardson AE, Hocking PJ, Simpson RJ, George TS.  2009.  Plant mechanisms to optimise access to soil phosphorus. Crop and Pasture Science. 60:124-143.
Bradshaw JE.  2009.  Potato breeding at the Scottish Plant Breeding Station and the Scottish Crop Research Institute: 1920-2008 (Invited Review). Potato Research. 52:141-172.
Debeljak M, Kocev D, Towers W, Jones M, Griffiths BS, Hallett PD.  2009.  Potential of multi-objective models for risk-based mapping of the resilience characteristics of soils: demonstration at a national level. Soil Use and Management. 25:66-77.
Agu RC, Swanston JS, Walker JW, Pearson SY, Bringhurst TA, Brosnan JM, Jack FR.  2009.  Predicting alcohol yield from UK soft winter wheat for grain distilling: combined influence of hardness and nitrogen measurements. Journal of the Institute of Brewing. 115:183-190.
Granum E, Roberts K, Raven JA, Leegood RC.  2009.  Primary carbon and nitrogen metabolic gene expression in the diatom Thalassiosira pseudonana (Bacillariophyceae): Diel periodicity and effects of inorganic carbon and nitrogen. Journal of Phycology. 45:1083-1092.
Hein I, Birch PRJ, Danan S, Lefebvre V, Odeny DA, Gebhardt C, Trognitz F, Bryan GJ.  2009.  Progress in mapping and cloning qualitative and quantitative resistance against Phytophthora infestans in potato and its wild relatives. Potato Research. 52:215-227.
Garnett MH, Hartley IP, Hopkins DW, Sommerkorn M, Wookey PA.  2009.  A passive sampling method for radiocarbon analysis of soil respiration using molecular sieve. Soil Biology and Biochemistry. 41(7):1450-1456.
Winward GP, Avery LM, Stephenson T, Jeffrey P, Le Corre KS, Fewtrell L, Jefferson B.  2009.  Pathogens in urban wastewaters suitable for reuse. Urban Water Journal. 6(4):291-301.
Winward GP, Avery LM, Stephenson T, Jeffrey P, Le Corre KS, Fewtrell L, Jefferson B.  2009.  Pathogens in urban wastewaters suitable for reuse. Urban Water Journal. 6(4):291-301.
Fraser MD, Davies DA, Vale JE, Nute GR, Hallett KG, Richardson RI, Wright IA.  2009.  Performance and meat quality of native and continental cross steers grazing ryegrass/white clover improved pasture or semi-natural rough grazing. Livestock Science. 123:70-82.
Zhou JL, Zhang ZL, Banks E, Grover D, Jiang JQ.  2009.  Pharmaceutical residues in wastewater treatment works effluents and their impact on receiving river water. Journal of Hazardous Materials.. 166(2-3):655-661.
Vo TKT, Orskov ER, Susmel P.  2009.  Physiological mechanism of low purine derivative excretion in urine of buffaloes compared with Bos taurus cattle. Animal Production Science. 49(11):994-997.
Macdonald CA, Thomas N, Robinson L, Tate KR, Ross DJ, Dando J, Singh BK.  2009.  Physiological, biochemical and molecular responses of soil microbial community after afforestation of pastures with Pinus radiata. Soil Biology and Biochemistry. 41(8):1642-1651.
Pettorelli N, Katzner T, Gordon IJ, Garner T, Mock K, Redpath S, Gompper M.  2009.  Possible consequences of the Copenhagen climate change meeting for conservation of animals. Animal Conservation. 12(6):503-504.
Pakeman RJ, Small JL.  2009.  Potential and realised contribution of endozoochory to seedling establishments. Basic and Applied Ecology. 10(7):656-661.
Hall CM, Rhind SM, Wilson MJ.  2009.  The potential for use of gastropod molluscs as bioindicators of endocrine disrupting compounds in the terrestrial environment. Journal of Environmental Monitoring. 11(3):491-497.
Urquhart J, Courtney P, Slee W.  2009.  Private ownership and public good provision in English woodlands. Small Scale Forestry, Published online. 9
Coleby AM, Aspinall PA, Miller RA.  2009.  Public attitudes and participation in wind turbine development. Journal of Environmental Assessment Policy and Management. 11(1):69-95.
Eves-van den Akker S, Lilley CJ, Jones JT, Urwin PE.  2009.  Plant-parasitic nematode feeding tubes and plugs: new perspectives on function. Nematology. 17:1-9.
2008
Blok VC, Jones JT, Phillips MS, Trudgill DL.  2008.  Parasitism genes and host range disparities in biotrophic nematodes: the conundrum of polyphagy versus specialism. Bioessays. 30:249-259. Abstract
Yahiaoui S, Igartua E, Moralejo M, Ramsay L, Molina-Cano J-L, Ciudad FJ, Lasa JM, Gracia MP, Casas AM.  2008.  Patterns of genetic and eco-geographical diversity in Spanish barleys. Theoretical and Applied Genetics. 116:271-282. Abstract
Wang J, Zhang X, Bengough AG, Crawford JW.  2008.  Performance evaluation of the cell-based algorithms for domain decomposition in flow simulation. International Journal of Numerical Methods for Heat & Fluid Flow. 18:656-672. Abstract
Chapman SN, Faulkner C, Kaiserli E, Garcia-Mata C, Savenkov EI, Roberts AG, Oparka KJ, Christie JM.  2008.  The photoreversible fluorescent protein iLOV outperforms GFP as a reporter of plant virus infection. Proceedings of the National Academy of Sciences, USA. 105:20038-20043. Abstract
K SF, Raven JA.  2008.  Photosynthetic oscillation in individual cells of the marine diatom Coscinodiscus wailesii (Bacillariophyceae) revealed by microsensor measurements. Photosynthesis Research. 95:37-44. Abstract
Dobson G, Shepherd T, Verrall SR, Conner S, McNicol JW, Ramsay G, Shepherd LVT, Davies HV, Stewart D.  2008.  Phytochemical diversity in tubers of potato cultivars and landraces using a GC-MS metabolomics approach. Journal of Agricultural and Food Chemistry. 56:10280-10291. Abstract
van Poppel PMJA, Guo J, van de Vondervoort PJI, Jung MWM, Birch PRJ, Whisson SC, Govers F.  2008.  The Phytophthora infestans avirulence gene Avr4 encodes an RXLR-dEER effector. Molecular Plant-Microbe Interactions. 21:1460-1470. Abstract
Mostowfizadeh-Ghalamfarsa R, Cooke DEL, Banihashemi Z.  2008.  Phytophthora parsiana sp. nov., a new high-temperature tolerant species. Mycological Research. 112:783-794. Abstract
Lambers H, Raven JA, Shaver GR, Smith SE.  2008.  Plant nutrient-acquisition strategies change with soil age. Trends in Ecology and Evolution. 23:94-103. Abstract
Palukaitis P, Carr JP.  2008.  Plant resistance responses to viruses. Journal of Plant Pathology. 90:153-171.
Harrison BD.  2008.  Plant virology in the 20th century. Phytopathology. 98, Supplement:S193-S194. Abstract
Canetta E, Kim S-H, Kalinina NO, Shaw J, Adya AK, Gillespie T, Brown JWS, Taliansky ME.  2008.  A plant virus movement protein forms ringlike complexes with the major nucleolar protein, fibrillarin, in vitro. Journal of Molecular Biology. 376:932-937. Abstract
Grouffaud S, van West P, Avrova AO, Birch PRJ, Whisson SC.  2008.  Plasmodium falciparum and Hyaloperonospora parasitica effector translocation motifs are functional in Phytophthora infestans. Microbiology. 154:3743-3751. Abstract
Riepsamen AH, Blok VC, Phillips MS, Gibson T, Dowton M.  2008.  Poly(T) variation within mitochondrial protein-coding genes in Globodera (Nematoda : Heteroderidae). Journal of Molecular Evolution. 66:197-209. Abstract
Leckie FM, Arroyo B, Redpath SM, Thirgood SJ.  2008.  Parental differences in brood provisioning by Hen Harriers Circus cyaneus. Bird Study. 55(2):209-215.
Millard P, Midwood AJ, Hunt JE, Whitehead D, Boutton T.  2008.  Partitioning soil surface CO2 efflux into autotrophic and heterotrophic components, using natural gradients in soil &13C in an undisturbed savannah soil. Soil Biology and Biochemistry. 40(7):1575-1582.
van der Linde S, Alexander IJ, Anderson IC.  2008.  A PCR-based method for detecting the mycelia of stipitate hydnoid fungi in soil. Journal of Microbiological Methods. 75(1):40-46.
Day-Stirrat RJ, Loucks RG, Milliken KL, Hillier S, van der Pluijm BA.  2008.  Phyllosilicate orientation demonstrates early timing of compactional stabilization in calcite-cemented concretions in the Barnett Shale (Late Mississippian), Fort Worth Basin, Texas (U.S.A). Sedimentary Geology. 208(1-2):27-35.
Beugelsdijk DCM, van der Linde S, Zuccarello GC, den Bakker HC, Draisma SGA, Noordeloos ME.  2008.  A phylogenetic study of Boletus section Boletus in Europe. Persoonia. 20:1-7.
Chaudri A, McGrath S, Gibbs P, Chambers B, Carlton-Smith C, Bacon J, Campbell CD, Aitken M.  2008.  Population size of indigenous Rhizobium leguminosarum biovar trifolii in long-term field experiments with sewage sludge cake, metal-amended liquid sludge or metal salts: Effects of zinc, copper and cadmium. Soil Biology and Biochemistry. 40(7):1670-1680.
Pakeman RJ, Reid CL, Lennon JJ, Kent M.  2008.  Possible interactions between environmental factors in determining species optima. Journal of Vegetation Science. 19:201-208.
Sutherland LA.  2008.  Post-Soviet agricultural employment: A case study of employee incentives in Krasnodar Territory, Russia. Journal of Peasant Studies. 35(3):369-389.
Hetherington DA, Miller DR, Macleod CD, Gorman ML.  2008.  A potential habitat network for the Eurasian lynx Lynx lynx in Scotland. Mammal Review. 38(3):285-303.
Debeljak M, Kocev D, Towers W, Jones M, Griffiths BS, Hallett PD.  2008.  Potential of multi-objective models for risk-based mapping of the resilience characteristics of soils: demonstration at a national level. Soil Use and Management. 25(1):66-77.
Aitkenhead MJ, Aalders IH.  2008.  Predicting land cover using GIS, Bayesian and evolutionary algorithm methods. Journal of Environmental Management.. 90:236-250.
Kleeberg R, Monecke T, Hillier S.  2008.  Preferred orientation of mineral grains in sample mounts for quantitative XRD measurements: How random are powder samples? Clays and Clay Minerals. 56(4):404-415.
Lilly A, Nemes A, Rawls WJ, Pachepsky YA.  2008.  Probabilistic approach to the identification of input variables to estimate hydraulic conductivity. Soil Science Society of America Journal. 72(1):16-24.
Rouchier J, Cioffi-Revilla C, Polhill JG, Takadama K.  2008.  Progress in model-to-model analysis. Journal of Artificial Societies and Social Simulation. 11(2):8.
Nijnik M, Zahvoyska L, Nijnik, M.; Mather A, Ode A.  2008.  Public evaluation of landscape content and change: Several examples from Europe. Land Use Policy. 26:77-86.
Vagiri M, Conner S, Stewart D, Andersson SC, Verrall S, Johansson E, Rumpunen K.  2008.  Phenolic compounds in blackcurrant (Ribes nigrum L.) leaves relative to leaf position and harvest date. Food Chemistry. 172:135-142.
2007
Stamati K, Hollingsworth PM, Russell JR.  2007.  Patterns of clonal diversity in three species of sub-arctic willow (Salix lanata, Salix lapponum and Salix herbacea). Plant Systematics and Evolution. 269:75-88. Abstract
Judge J, Davidson RS, Marion G, White PCL, Hutchings MR.  2007.  Persistence of Mycobacterium avium subspecies paratuberculosis in rabbits: the interplay between horizontal and vertical transmission. Journal of Applied Ecology. 44:302-311. Abstract

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The James Hutton Research Institute is the result of the merger in April 2011 of MLURI and SCRI. This merger formed a new powerhouse for research into food, land use, and climate change.