Publications list

Found 574 results

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2011

Johnson D, Vachon J, Britton AJ, Helliwell RC. 2011. Drought alters carbon fluxes in alpine snowbed ecosystems through contrasting impacts on graminoids and forbs. New Phytologist. 190:740-749.

Karley AJ, Valentine TA, Squire GR. 2011. Dwarf alleles differentially affect barley root traits influencing nitrogen acquisition under low nutrient supply. Journal of Experimental Botany. 62:3917-3927.

Garcia-Palacios P, Bowker MA, Chapman SJ, Maestre FT, Soliveres S, Gallardo A, Valladares F, Guerrero C, Castillo-Monroy AP, Escudero A. 2011. Early-successional vegetation changes after roadside prairie restoration modify soil functioning by changing microbial functional diversity. Soil Biology and Biochemistry. 43:1245-1253.

Fischer A, Peters V, Vavra J, Neebe M, Megyesi G. 2011. Energy use, climate change and folk psychology: Does sustainability have a chance? Results from a qualitative study in five European countries Global Environmental Change. 21:1025-1034.

Andersen R, Poulin M, Borcard D, Laiho R, Laine J, Vasander H, Tuittila ET. 2011. Environmental control and spatial structures in peatland vegetation. Journal of Vegetation Science. 22:878-890.

Vetukuri RR, Avrova AO, Grenville-Briggs LJ, van West P, Soderbom F, Savenkov EI, Whisson SC, Dixelius C. 2011. Evidence for involvement of Dicer-like, Argonaute and histone deacetylase proteins in gene silencing in Phytophthora infestans. Molecular Plant Pathology. 12:772-785.

Bernhardt-Romermann M, Gray A, Vanbergen AJ, Berges L, Bohner A, Brooker RW, De Bruyn L, De Cinti B, Dirnbrock T, Grandin U et al.. 2011. Functional traits and local environment predict vegetation responses to disturbance: a pan-European multi-site-experiment. Journal of Ecology. 99:777-787.

Druka A, Franckowiak JD, Lundqvist U, Bonar N, Alexander J, Houston K, Radovic S, Shahinnia F, Vendramin V, Morgante M et al.. 2011. Genetic dissection of barley morphology and development. Plant Physiology. 155:617-627.

Martin-Sanz A, Caminero C, Jing R, Flavell AJ, de la Vega MP. 2011. Genetic diversity among Spanish pea (Pisum sativum L.) landraces, pea cultivars and the world Pisum sp. core collection assessed by retrotransposon-based insertion polymorphisms (RBIPs). Spanish Journal of Agricultural Research. 9:166-178.

Sait M, Clark EM, Wheelhouse N, Spalding L, Livingstone M, Sachse K, Markey BK, Magnino S, Siarkou VI, Vretou E et al.. 2011. Genetic variability of Chlamydophila abortus strains assessed by PCR-RFLP analysis of polymorphic membrane protein-encoding genes. Veterinary Microbiology. 151:284-290.

Glasner JD, Yang C, Reverchon S, Hugouvieux-Cotte-Pattat N, Condemine G, Bohin JP, Van GF, Yang S, Franza T, Expert D et al.. 2011. Genome sequence of the plant-pathogenic bacterium Dickeya dadantii 3937. Journal of Bacteriology. 193:2076-2077.

de Boer JM, Borm TJA, Jesse T, Brugmans B, Tang XM, Bryan GJ, Bakker J, van EHJ, Visser RGF. 2011. A hybrid BAC physical map of potato: a framework for sequencing a heterozygous genome. BMC Genomics. 12:ArticleNo.594..

Fletcher T, Leonardi G, Hough RL, Goessler W, Gurzau E, Koppova K, Rudnai P, Vahter M. 2011. The impact of exposure metric choice for cancers related to arsenic in drinking water in Central Europe. Epidemiology. 22:S102-S103.

Veresoglou SD, Mamolos AP, Thornton B, Voulgari OK, Sen R, Veresoglou S. 2011. Medium-term fertilization of grassland plant communities masks plant species linked effects on soil microbial community structure. Plant and Soil. 344:187-196.

Abreu IN, Choi YH, Sawaya ACHF, Eberlin MN, Mazzafera P, Verpoorte R. 2011. Metabolic alterations in different development stages Pilocarpus microphyllus. Planta Medica. 77:293-300.

Lapierre H, Vazquez-Anon M, Parker D, Dubreuil P, Holtrop G, Lobley GE. 2011. Metabolism of 2-hydroxy-4-(methylthio)butanoate (HMTBA) in lactating dairy cows. Journal of Dairy Science. 94:1526-1535.

Ross HA, Morris WL, Ducreux LJM, Hancock RD, Verrall SR, Morris JA, Tucker GA, Stewart D, Hedley PE, McDougall GJ et al.. 2011. Pectin engineering to modify product quality in potato. Plant Biotechnology Journal. 9:848-856.

Vartapetian AB, Tuzhikov AI, Chichkova NV, Taliansky ME, Wolpert TJ. 2011. A plant alternative to animal caspases: subtilisin-like proteases. Cell Death and Differentiation. 18:1289-1297.

Veronico P, Melillo MT, Saponaro C, Leonetti P, Picardi E, Jones JT. 2011. A polygalacturonase-inhibiting protein with a role in pea defence against the cyst nematode Heterodera goettingianna. Molecular Plant Pathology. 12:275-287.

Wojniusz S, Vogele C, Ropstad E, Evans N, Robinson J, Suetterlin S, Erhard HW, Solbakk AK, Endestad T, Oldberg DE et al.. 2011. Prepubertal gonadotropin-releasing hormone analog leads to exagerrated behavioral and emotional sex differences in sheep. Hormones and Behavior. 59:22-27.

Gilroy EM, Breen S, Whisson SC, Squires J, Hein I, Kaczmarek M, Turnbull D, Boevink P, Lokossou A, Cano LM et al.. 2011. Presence/absence, differential expression and sequence polmorphisms between PiAVR2 and PiAVR2-like in Phytophthora infestans determine virulence on R2 plants. New Phytologist. 191:763-776.

Nijnik M, Miller DR, Nijnik, M.; Mather A, Fiorini S, Vogt N, Brondizio E, Morrice JG. 2011. Public participation for planning the sustainable use of natural resources and landscape changes. International Journal of Interdisciplinary Social Sciences. 5:303-320.

Vinuela-Fernandez I, Jones E, McKendrick IJ, Molony V. 2011. Quantitative assessment of increased sensitivity of chronic laminitic horses to hoof tester evoked pain. Equine Veterinary Journal. 43:62-68.

Balana BB, Vinten AJA, Slee B. 2011. A review on cost-effectiveness analysis of agri-environmental measures related to the EU WFD: Key issues, methods, and applications. Ecological Economics. 70:1021-1031.

Bengough AG, McKenzie BM, Hallett PD, Valentine TA. 2011. Root elongation, water stress, and mechanical impedance: a review of limiting stresses and beneficial root tip traits. Journal of Experimental Botany. 62:59-68.

Lux A, Martinka M, Vaculik M, White PJ. 2011. Root responses to cadmium in the rhizosphere: a review. Journal of Experimental Botany. 62:21-37.

Vetukuri RR, Tian ZD, Avrova AO, Savenkov EI, Dixelius C, Whisson SC. 2011. Silencing of the PiAtvr3a effector-encoding gene from Phytophthora infestans by transcriptional fusion to a short interspersed element. Fungal Biology. 115:1225-1233.

Ceccon C, Panzacchi P, Scandellari F, Prandi L, Ventura M, Russo B, Millard P, Tagliavini M. 2011. Spatial and temporal effects of soil temperature and moisture and the relation to fine root density on root and soil respiration in a mature apple orchard. Plant and Soil. 342:195-206.

2010

Schornack S, Van Damme M, Bozkurt TO, Cano LM, Smoker M, Thines M, Gaulin E, Kamoun S, Huitema E. 2010. Ancient class of translocated oomycete effectors targets the host nucleus. Proceedings of the National Academy of Sciences, USA. 107:17421-17426.

Walker PG, Viola R, Woodhead M, Jorgensen L, Gordon SL, Brennan RM, Hancock RD. 2010. Ascorbic acid content of blackcurrant fruit is influenced by both genetic and enviromental factors. Functional Plant Science and Biotechnology. 4:40-52.

Newton AC, Akar T, Baresel JP, Bebeli PJ, Bettencourt E, Bladenopoulos KV, Czembor JH, Fasoula DA, Katsiotis A, Koutis K et al.. 2010. Cereal landraces for sustainable agriculture. A review (Review). Agronomy for Sustainable Development. 30:237-269.

Smith P, Gregory PJ, van Vuuren D, Obersteiner M, Havlik P, Rounsevell M, Woods J, Stehfest E, Bellarby J. 2010. Competition for land. Philosophical Transactions of the Royal Society of London B - Biological Sciences. 365:2941-2957.

Bagavathiannan MV, Gulden RH, Begg GS, Van Acker RC. 2010. The demography of feral alfalfa (Medicago sativa L.) populations occurring in road side habitats in southern Manitoba Canada: Implications for novel trait confinement. Environmental Science and Pollution Research. 17:1448-1459.

Chen XW, Niks RE, Hedley PE, Morris J, Druka A, Marcel TC, Vels A, Waugh R. 2010. Differential gene expression in nearly isogenic lines with QTL for partial resistance to Puccinia hordei in barley. BMC Genomics. 11:-629.

Ross HA, McDougall GJ, Vincent JFV, Stewart D, Verrall SR, Taylor MA. 2010. Discerning intra-tuber differences in textural properties in cooked Solanum tuberosum group Tuberosum and group Phureja tubers. Journal of the Science of Food and Agriculture. 90:1527-1532.

Dupuy L, Vignes M, McKenzie BM, White PJ. 2010. The dynamics of root meristem distribution in the soil. Plant Cell and Environment. 33:358-369.

Tighe P, Duthie GG, Vaughan N, Brittenden J, Simpson WG, Duthie S, Mutch W, Wahle K, Horgan GW, Thies F. 2010. Effect of increased consumption of whole-grain foods on blood pressure and other cardiovascular risk markers in healthy middle-aged persons: a randomised controlled trial. American Journal of Clinical Nutrition. 94:733-740.

Vysotskaya LB, Hedley PE, Sharipova G, Veselov D, Kudoyarova G, Morris JA, Jones HG. 2010. Effect of salinity on water relations of wild barley plants differing in salt tolerance. AoB Plants. :-plq006.

Chen XW, Hackett CA, Niks RE, Hedley PE, Booth C, Druka A, Marcel TC, Vels A, Bayer M, Milne I et al.. 2010. An eQTL analysis of partial resistance to Puccinia hordei in barley. PLoS One. 5:-e8598.

Roberts TJ, McKenna SJ, Du CJ, Wuyts N, Valentine TA, Bengough AG. 2010. Estimating the motion of plant root cells from in vivo confocal laser scanning microscopy images. Machine Vision and Applications. 21:921-939.

Druka A, Franckowiak JD, Lundqvist U, Bonar N, Alexander J, Guzy-Wrobelska J, Ramsay L, Druka I, Grant I, Macaulay M et al.. 2010. Exploiting induced variation to dissect quantitative traits in barley. Biochemical Society Transactions. 38:683-688.

Stushnoff C, Ducreux LJM, Hancock RD, Hedley PE, Holm DG, McDougall GJ, McNicol JW, Morris J, Morris WL, Sungurtas J et al.. 2010. Flavonoid profiling and transcriptome analysis reveals new gene-metabolite correlations in tubers of Solanum tuberosum L. Journal of Experimental Botany. 61:1225-1238.

Porter JR, Challinor A, Ewert F, Falloon P, Fischer T, Gregory PJ, Van Ittersum MK, Olesen JE, Moore KJ, Rosenzweig C et al.. 2010. Food security: focus on agriculture. Science. 328:172-173.

Jing RC, Vershinin AV, Grzebyta J, Shaw P, Smykal P, Marshall DF, Ambrose MJ, Ellis THN, Flavell AJ. 2010. The genetic diversity and evolution of field pea (Pisum) studied by high throughput retrotransposon based insertion polymorphism (RBIP) marker analysis. BMC Evolutionary Biology. 10:-44.

De Maayer P, Chan WY, Venter SN, Toth IK, Birch PRJ, Joubert F, Coutinho TA. 2010. Genome sequence of Pantoea ananatis LMG20103, the causative agent of Eucalyptus blight and dieback. Journal of Bacteriology. 192:2936-2937.

Richards S, Gibbs RA, Gerardo NM, Moran N, Nakabachi A, Stern D, Tagu D, Wilson ACC, Muzny D, Kovar C et al.. 2010. Genome sequence of the pea aphid Acyrthosiphon pisum. PLOS Biology. 8:-e1000313.

Taliansky ME, Brown JWS, Rajam ML, Valkonen JPT, Kalinina NO. 2010. Involvement of the plant nucleolus in virus and viroid infections: Parallels with animal pathosystems. Advances in Virus Research. 77:119-158.

Dobson G, Shepherd T, Verrall SR, Griffiths DW, Ramsay G, McNicol JW, Davies HV, Stewart D. 2010. A metabolomics study of cultivated potato (Solanum tuberosum) groups, Andigena, Phureja, Stenotomum and Tuberosum using gas chromatography-mass spectrometry. Journal of Agricultural and Food Chemistry. 58:1214-1223.

Chichkova NV, Shaw J, Galiullina RA, Drury GE, Tuzhikov AI, Kim S-H, Kalkum M, Hong TB, Gorshkova EN, Torrance L et al.. 2010. Phytaspase, a relocalisable cell death promoting plant protease with caspase specificity. EMBO Journal. 29:1149-1161.

Bos JIB, Armstrong MR, Gilroy EM, Boevink P, Hein I, Taylor RM, Tian ZD, Engelhardt S, Vetukuri RR, Harrower BE et al.. 2010. Phytophthora infestans effector AVR3a is essential for virulence and manipulates plant immunity by stabilizing host E3 ligase CMPG1. Proceedings of the National Academy of Sciences, USA. 107:9909-9914.

Bengough AG, Hans J, Bransby MF, Valentine TA. 2010. PIV as a method for quantifying root cell growth and particle displacement in confocal images. Microscopy Research and Technique. 73:27-36. Abstract

Rietman H, Champouret N, Hein I, Niks RE, Vleeshouwers VGAA. 2010. Plant and oomycetes, an intimate relationship: co-evolutionary principles and impact on agricultural practice. CAB Review. 58:1-17.

Vollsnes A, Futsaether CM, Bengough AG. 2010. Quantifying rhizosphere particle movement around mutant maize roots using time-lapse imaging and particle image velocimetry. European Journal of Soil Science. 61:926-939.

Oliva R, Win J, Raffaele S, Boutemy L, Bozkurt TO, Chaparro-Garcia A, Segretin ME, Stam R, Schornack S, Cano LM et al.. 2010. Recent developments in effector biology of filamentous plant pathogens. Cellular Microbiology. 12:705-715.

Morris WL, Shepherd T, Verrall SR, McNicol JW, Taylor MA. 2010. Relationships between volatile and non-volatile metabolites and attributes of processed potato flavour. Phytochemistry. 71:1765-1773.

Vittoz P, Bayfield N, Brooker R, Elston DA, Duff EI, Theurillat JP, Guisan A. 2010. Reproducibility of species lists, visual cover estimates and frequency methods for recording high-mountain vegetation. Journal of Vegetation Science. 21:1035-1047.

K A, Kuiper HA, Marvin HJP, Boon PE, Busk L, Cnudde FC, Cope S, Davies HV, Dreyer M, Frewer LJ et al.. 2010. The SAFE FOODS framework for improved risk analysis of foods. Food Control. 21:1566-1587.

Hodgson JG, Sharafi M, Jalili A, Diaz S, Montserrat-Marti G, Palmer C, Cerabolini B, Pierce S, Hamzehee B, Asri Y et al.. 2010. Stomatal vs. genome size in angiosperms: The somatic tail wagging the genomic dog? Annals of Botany. 105:573-584.

Iannetta PPM, Begg GS, Valentine TA, Wishart J. 2010. Sustainable disease control using weeds as indicators: Capsella bursa pastoris and Tobacco Rattle Virus. Weed Research. 50:511-514.

Verchot-Lubicz J, Torrance L, Solovyev AG, Morozov SY, Jackson AO, Gilmer D. 2010. Varied movement strategies employed by triple gene block encoding viruses (Review). Molecular Plant-Microbe Interactions. 23:1231-1247.

Vinichuk M, Taylor AFS, Rosen K, Johanson KJ. 2010. Accumulation of potassium, rubidium and caesium (133Cs and 137Cs) in various fractions of soil and fungi in a Swedish forest. The Science of the Total Environment. 408:2543-2548.

Hough RL, Fletcher T, Leonardi GS, Goessler W, Gnagnarella P, Clemens F, Gurzau E, Koppova K, Rudnai P, Kumar R et al.. 2010. Lifetime exposure to arsenic in residential drinking water in Central Europe. International Archives of Occupational and Environmental Health. 83(5):471-481.

Toberman H, Laiho R, Evans CD, Artz RRE, Fenner N, Vavrova P, Freeman C. 2010. Long-term drainage for forestry inhibits extracellular phenol oxidase activity in Finnish boreal mire peat. European Journal of Soil Science. 61(6):950-957.

Villar-Salvador P, Norberto H, Millard P. 2010. Remobilization of acorn nitrogen for seedling growth in holm oak (Quercus ilex), cultivated with contrasting nutrient availability. Tree Physiology.. 30(2):257-263.

Abarenkov K, Nilsson RH, Larsson KH, Alexander IJ, Eberhardt U, Erland S, Hoiland K, Kjoller R, Larsson E, Pennanen T et al.. 2010. The UNITE database for molecular identification of fungi - recent updates and future perspectives. New Phytologist. 186(2):281-285.

2009

Van Toor R, Malloch G, Fenton B. 2009. A concept for management of virus-vectors and insecticide resistance in Myzus persicae on potatoes. Redia. XCII:219-221.

Close TJ, Bhat PR, Lonardi S, Wu Y, Rostoks N, Ramsay L, Druka A, Stein N, Svensson JT, Wanamaker S et al.. 2009. Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics. 10:-582.

Lokossou AA, Park TH, van Arkel G, Arens M, Ruyter-Spira C, Morales J, Whisson SC, Birch PRJ, Visser RGF, Jacobsen E et al.. 2009. Exploiting knowledge of R/Avr genes to rapidly clone a new LZ-NBS-LRR family of late blight resistance genes from potato linkage group IV. Molecular Plant-Microbe Interactions. 22:630-641.

Haas BJ, Kamoun S, Zody MC, Jiang RHY, Handsaker RE, Cano LM, Grabherr M, Kodira CD, Raffaele S, Torto-Alalibo T et al.. 2009. Genome sequence and analysis of the Irish potato famine pathogen Phytophthora infestans. Nature. 461:393-398.

Dennis PG, Hirsch PR, Smith SJ, Taylor RG, Valsami-Jones E, Miller AJ. 2009. Linking rhizoplane pH and bacterial density at the microhabitat scale. Journal of Microbiological Methods. 76:101-104.

Vinten AJA, Potts JM, Avery L, Strachan NJC. 2009. Microbial pollution of water by livestock: approaches to risk assessment and mitigation. Animal. 3:744-752.

Cummings SP, Gyaneshwar P, Vinuesa P, Farruggia FT, Andrews M, Humphry D, Elliott GN, Nelson A, Orr C, Pettitt D et al.. 2009. Nodulation of Sesbania species by Rhizobium (Agrobacterium) strain IRBG74 and other Rhizobia. Environmental Microbiology. 11:2510-2525.

Hinsinger P, Bengough AG, Vetterlein D, Young IM. 2009. Rhizosphere: biophysics, biogeochemistry and ecological relevance. Plant and Soil. 321:117-152.

Ma'shum M, Tisdall JM, Borrell AK, McKenzie BM, Gill JS, Kusnarta IGM, Sukartono M, Van Cooten DE. 2009. Rice responses to soil management in rice-based cropping system in the semi-arid tropics of southern Lombok, Eastern Indonesia. Field Crops Research. 110:197-206. Abstract

Visser RGF, Bachem CWB, de Boer JM, Bryan GJ, Chakrabati SK, Feingold S, Gromadka R, van Ham RCHJ, Huang SW, Jacobs JME et al.. 2009. Sequencing the potato genome: Outline and first results to come from the elucidation of the sequence of the world's most important food crop. American Journal of Potato Research. 86:417-429.

Garc R, Ochoa V, Vi B, Hinojosa MB, Pe R, Li G, Linares JC, Carreira JA. 2009. Soil enzymes, nematode community and selected physico-chemical properties as soil quality indicators in organic and conventional olive oil farming: influence of seasonality and site features. Applied Soil Ecology. 41:305-314. Abstract

Ki LP, Felber F, Flavell AJ, Guadagnuolo R, Guiatti D, Hauser TP, Olivieri AM, Scotti I, Syed NH, Vischi M et al.. 2009. Spontaneous gene flow and population structure in wild and cultivated chicory, Cichorium intybus L.. Genetic Resources and Crop Evolution. 56:405-419.

Elliott GN, Chou JH, Chen WM, Bloemberg GV, Bontemps C, Martinez-Romero E, Velazquez E, Young JPW, Sprent JI, James EK. 2009. Burkholderia spp. are the most competitive symbionts of Mimosa, particularly under N-limited conditions. Environmental Microbiology. 11(4):762-778.

Brooker RW, Callaway RM, Cavieres L, Kikvidze Z, Lortie CJ, Michalet R, Pugnaire FI, Valiente-Banuet A, Whitham TG. 2009. Don't diss integration: A comment on Ricklef's disintegrating communities. American Naturalist.. 174(6):919-927.

Langan SJ, Fransson L, Vanguelova E. 2009. Dynamic modelling of the response of UK forest soils to changes in acid deposition using the SAFE model. The Science of the Total Environment. 407(21):5605-5619.

Stott AW, Vousough-Ahmadi B, Morgan-Davies C, Dwyer C, Goddard PJ, Phillips K, Milne CE, Kupiec B, Ringrose S, Waterhouse A. 2009. Evaluating extensive sheep farming systems. Aspects of Applied Biology, 93, 161-166. Proceedings of the Integrated Agricultural Systems: Methodologies, Modelling and Measurement Conference, Edinburgh, UK, 2-4, June 2009.. 93:161-166.

Parrent JL, James TY, Vasaitis R, Taylor AFS. 2009. Friend or foe? Evolutionary history of glycoside hydrolase family 32 genes encoding for sucrolytic activity and the implication for fungal symbiosis BMC Evolutionary Biology, 9, 148..

Poggio L, Vrscaj B. 2009. A GIS-based human health risk assessment for urban green space planning -- An example from Grugliasco (Italy). The Science of the Total Environment. 407(23):5961-5970.

Veiberg V, Mysterud A, Irvine RJ, Sormo W, Langvatn R. 2009. Increased mass of reticulo-rumen tissue and contents with advancing age in Svalbard reindeer. Journal of Zoology. 278(1):15-23.

Vandenberge C, Prior G, Littlewood NA, Brooker RW, Pakeman RJ. 2009. Influence of livestock grazing on meadow pipit foraging behaviour in upland grassland. Basic and Applied Ecology. 10:662-670.

Milne E, Aspinall RJ, Veldkamp TA. 2009. Integrated modelling of natural and social systems in land change science PREFACE. Landscape Ecology. 24(9):1145-1147.

Vinten AJA, Avery LM, Potts JM, Strachan N. 2009. Microbial pollution of water by livestock: approaches to risk assessment and mitigation. Animal. 3(5):744-752.

Cummings SP, Gyaneshwar P, Vinuesa P, Farruggia FT, Andrews M, Humphry D, Elliott GN, Nelson A, Orr C, Pettitt D et al.. 2009. Nodulation of Sesbania species by Rhizobium (Agrobacterium) strain IRBG74 and other rhizobia. Environmental Microbiology. 11(10):2510-2525.

Fraser MD, Davies DA, Vale JE, Nute GR, Hallett KG, Richardson RI, Wright IA. 2009. Performance and meat quality of native and continental cross steers grazing ryegrass/white clover improved pasture or semi-natural rough grazing. Livestock Science. 123:70-82.

Vo TKT, Orskov ER, Susmel P. 2009. Physiological mechanism of low purine derivative excretion in urine of buffaloes compared with Bos taurus cattle. Animal Production Science. 49(11):994-997.

Matesanz S, Brooker RW, Valladares F, Klotz S. 2009. Temporal dynamics of marginal steppic vegetation over a 26-year period of substantial environmental change. Journal of Vegetation Science. 20:299-310.

2008

Hancock RD, Chudek S, Walker PG, Pont SDA, Viola R. 2008. Ascorbic acid conjugates isolated from the phloem of Cucurbitaceae. Phytochemistry. 69:1850-1858. Abstract

Kindred DR, Verhoeven TMO, Weightman RM, Swanston JS, Agu RC, Brosnan JM, Sylvester-Bradley R. 2008. Effects of variety and fertiliser nitrogen on alcohol yield, grain yield, starch and protein content, and protein composition of winter wheat. Journal of Cereal Science. 48:46-57. Abstract

Hensel G, Valkov V, Middlefell-Williams J, Kumlehn J. 2008. Efficient generation of transgenic barley: The way forward to modulate plant-microbe interactions. Journal of Plant Physiology. 165:71-82. Abstract

Kloosterman B, De Koeyer D, Griffiths R, Flinn B, Steuernagel B, Scholz U, Sonnewald S, Sonnewald U, Bryan GJ, Prat S et al.. 2008. Genes driving potato tuber initiation and growth: identification based on transcriptional changes using the POCI array. Functional & Integrative Genomics. 8:329-340. Abstract

Abad P, Gouzy J, Aury JM, Castagnone-Sereno P, Danchin EGJ, Deleury E, Perfus-Barbeoch L, Anthouard V, Artiguenave F, Blok VC et al.. 2008. Genome sequence of the metazoan plant-parasitic nematode Meloidogyne incognita. Nature Biotechnology. 26:909-915.

Van Toor RF, Foster SP, Anstead JA, Mitchinson S, Fenton B, Kasprowicz L. 2008. Insecticide resistance and genetic composition of Myzus persicae (Hemiptera:Aphididae) on field potatoes in New Zealand. Crop Protection. 27:236-247. Abstract

Dennis PG, Miller AJ, Clark IM, Taylor RG, Valsami-Jones E, Hirsch PR. 2008. A novel method for sampling bacteria on plant root and soil surfaces at the microhabitat scale. Journal of Microbiological Methods. 75:12-18. Abstract

Dobson G, Shepherd T, Verrall SR, Conner S, McNicol JW, Ramsay G, Shepherd LVT, Davies HV, Stewart D. 2008. Phytochemical diversity in tubers of potato cultivars and landraces using a GC-MS metabolomics approach. Journal of Agricultural and Food Chemistry. 56:10280-10291. Abstract

van Poppel PMJA, Guo J, van de Vondervoort PJI, Jung MWM, Birch PRJ, Whisson SC, Govers F. 2008. The Phytophthora infestans avirulence gene Avr4 encodes an RXLR-dEER effector. Molecular Plant-Microbe Interactions. 21:1460-1470. Abstract

Carreira JA, Vi B, Garc R, Ochoa V, Hinojosa MB. 2008. Recovery of biochemical functionality in polluted flood-plain soils: The role of microhabitat differentiation through revegetation and rehabilitation of the river dynamics. Soil Biology & Biochemistry. 40:2088-2097. Abstract

Vassilakos N, Bem F, Tzima A, Barker H, Reavy B, Karanastasi E, Robinson DJ. 2008. Resistance of transgenic tobacco plants incorporating the putative 57-kDa polymerase read-through gene of Tobacco rattle virus against rub-inoculated and nematode-transmitted virus. Transgenic Research. 17:929-941. Abstract

Hancock RD, Roberts AG, Viola R. 2008. A role for symplastic gating in the control of the potato tuber life cycle. Plant Signaling and Behaviour. 3:27-29. Abstract

Chichkova NV, Galiullina RA, Taliansky ME, Vartapetian AB. 2008. Tissue disruption activates a plant caspase-like protease with TATD cleavage specificity. Plant Stress. 2:89-95. Abstract

Bacon JR, Linge KL, Parrish RR, van Vaeck L. 2008. Atomic spectrometry update. Atomic mass spectrometry. Journal of Analytical Atomic Spectrometry. 23

Chen WM, de Faria SM, Chou JH, James EK, Elliott GN, Sprent JI, Bontemps C, Young JPW, Vandamme P. 2008. Burkholderia sabiae sp. nov., isolated from root nodules of Mimosa caesalpiniifolia. International Journal of Systematic and Evolutionary Microbiology. 58(9):2174-2179.

Acevedo P, Ruiz-Fons F, Vicente J, Reyes-Garcia AR, Alzaga V, Gortazar C. 2008. Estimating red deer abundance in a wide range of management situations in Mediterranean habitats. Journal of Zoology. 276(1):37-47.

Vinten AJA, Sym G, Avdic K, Crawford C, Duncan A, Merrilees DW. 2008. Faecal indicator pollution from a dairy farm in Ayrshire, Scotland: source apportionment, risk assessment and potential of mitigation measures. Water Research. 42(4-5):997-1012.

Johnson EK, Moran D, Vinten AJA. 2008. A framework for valuing the health benefits of improved bathing water quality in the River Irvine catchment. Journal of Environmental Management.. 87(4):633-638.

Keli A, Mayes RW, de Vega A. 2008. In vitro studies of the metabolism of [C-14]-n-alkanes using ruminal fluid of sheep as substrate. Animal. 2(12):1748-1752.

Vandenberghe C, Frelechoux F, Buttler A. 2008. The influence of competition from herbaceous vegetation and shade on simulated browsing tolerance of coniferous and deciduous saplings. Oikos. 117(3):415-423.

Poggio L, Vrscaj B, Hepperle E, Schulin R, Marsan FA. 2008. Introducing a method of human health risk evaluation for planning and soil quality management of heavy metal-polluted soils - An example from Grugliasco (Italy). Landscape and Urban Planning. 88(2-4):64-72.

Hernandez M, Villalobos P, Morgante V, Gonzalez M, Reiff C, Moore E, Seeger M. 2008. Isolation and characterization of a novel simazine-degrading bacterium from agricultural soil of central Chile, Pseudomonas sp MHP41. FEMS Microbiology Letters. 286(2):184-190.

McGechan MB, Lewis DR, Vinten AJA. 2008. A river water pollution model for assessment of best management practices for livestock farming. Biosystems Engineering. 99(2):292-303.

Vagiri M, Conner S, Stewart D, Andersson SC, Verrall S, Johansson E, Rumpunen K. 2008. Phenolic compounds in blackcurrant (Ribes nigrum L.) leaves relative to leaf position and harvest date. Food Chemistry. 172:135-142.

2007

Williamson B, Tudzynski B, Tudzynski P, Van Kan JAL. 2007. Botrytis cinerea: the cause of grey mould disease. Molecular Plant Pathology. 8:561-580. Abstract

Reavy B, Bagirova S, Chichkova NV, Fedoseeva SV, Kim S-H, Vartapetian AB, Taliansky ME. 2007. Caspase-resistant VirD2 protein provides enhanced gene delivery and expression in plants. Plant Cell Reports. 26:1215-1219. Abstract

Mazzitelli L, Hancock RD, Haupt S, Walker PG, Pont SDA, McNicol JW, Cardle L, Morris J, Viola R, Brennan RM et al.. 2007. Co-ordinated gene expression during phases of dormancy release in raspberry (Rubus idaeus L.) buds.. Journal of Experimental Botany. 58:1035-1045. Abstract

Vanbergen AJ, Jones TH, Halls RS, Watt AD, Elston DA. 2007. Consequences for a host-parasitoid interaction of host-plant aggregation, isolation and phenology. Ecological Entomology. 32:419-427. Abstract

Valentine TA, Randall E, Wypijewski K, Chapman S, Jones JT, Oparka KJ. 2007. Delivery of macromolecules to plant parasitic nematodes using a tobacco rattle virus vector. Plant Biotechnology Journal. 5:827-834. Abstract

Cortet J, Griffiths BS, Bohanec M, Demsar D, Andersen MN, Caul S, Birch ANE, Pernin C, Tabone E, de Vaufleury A et al.. 2007. Evaluation of effects of transgenic Bt maize on microarthropods in a European multi-site experiment. Pedobiologia. 51:207-218. Abstract

de Vaufleury A, Kramarz P, Binet P, Cortet J, Caul S, Andersen MN, Plumey E, Coeurdassier M, Krogh PH. 2007. Exposure and effects assessments of Bt maize on non-target organisms (gastropod, microarthropods, mycorrhizal fungi) in a semi-field microcosm experiment. Pedobiologia. 51:185-194. Abstract

Ramsey JS, Wilson ACC, de Vos M, Sun Q, Tamborindeguy C, Winfield A, Malloch G, Smith DM, Fenton B, Gray SM et al.. 2007. Genomic resources for Myzus persicae: EST sequencing, SNP identification, and microarray design. BMC Genomics. 8:-423. Abstract

Varshney RK, Marcel TC, Ramsay L, Russell JR, R MS, Stein N, Waugh R, Langridge P, Niks RE, Graner A. 2007. A high density barley microsatellite consensus map with 775 SSR loci. Theoretical and Applied Genetics. 114:1091-1103. Abstract

Sales J, Vali L, Hoyle DV, Yates CM, Amyes SGB, McKendrick IJ. 2007. The interaction between dam methylation sites and Xha1 restriction digest sites in Escherichia coli O157: H7 EDL933. Journal of Applied Microbiology. 102:820-825. Abstract

Gilroy EM, Hein I, van der Hoorn R, Boevink P, Venter E, McLellan H, Kaffarnik F, Hrubikova K, Shaw J, Holeva MC et al.. 2007. Involvement of cathepsin B in the plant disease resistance hypersensitive response. Plant Journal. 52:1-13. Abstract

Hancock RD, Walker PG, Pont SDA, Marquis N, Vivera S, Gordon SL, Brennan RM, Viola R. 2007. L-Ascorbic acid accumulation in fruit of Ribes nigrum occurs by in situ biosynthesis via the L-galactose pathway. Functional Plant Biology. 34:1080-1091. Abstract

Stewart D, McDougall GJ, Sungurtas J, Verrall SR, Graham J, Martinussen I. 2007. Metabolomic approach to identifying bioactive compounds in berries: Advances toward fruit nutritional enhancement. Molecular Nutrition and Food Research. 51:645-651. Abstract

Dauwe R, Morreel K, Goeminne G, Gielen B, Rohde A, Van Beeumen J, Ralph J, Boudet AM, Kopka J, Rochange SF et al.. 2007. Molecular phenotyping of lignin-modified tobacco reveals associated changes in cell-wall metabolism, primary metabolism, stress metabolism and photorespiration. Plant Journal. 52:263-285.

Avrova AO, Whisson SC, Pritchard L, Venter E, de Luca S, Hein I, Birch PRJ. 2007. A novel, non-protein-coding infection-specific gene family is clustered throughout the genome of Phytophthora infestans. Microbiology. 153:747-759. Abstract

Shepherd T, Dobson G, Verrall SR, Conner S, Griffiths DW, McNicol JW, Davies HV, Stewart D. 2007. Potato metabolomics by GC-MS: what are the limiting factors? Metabolomics. 3:475-488. Abstract

Hermans C, Hammond JP, Verbruggen N, White PJ. 2007. Response to Andrews et al.: Correlations and causality. Trends in Plant Science. 12:532-533. Abstract

Velikova V, Edreva AM, Tsonev T, Jones HG. 2007. Singlet oxygen quenching by phenylamides and their parent compounds. Zeischrift f. 62c:833-838.

Viola R, Pelloux J, van der Ploeg A, Gillespie T, Marquis N, Roberts AG, Hancock RD. 2007. Symplastic connection is required for bud outgrowth following dormancy in potato (Solanum tuberosum L.) tubers. Plant, Cell and Environment. 30:973-983. Abstract

van den Berg N, Berger DK, Hein I, Birch PRJ, Wingfield MJ, Viljoen A. 2007. Tolerance in banana to Fusarium wilt is associated with early up-regulation of cell wall-strengthening genes in the roots. Molecular Plant Pathology. 8:333-341. Abstract

Bacon JR, Linge KL, Parrish RR, van Vaeck L. 2007. Atomic spectrometry update: atomic mass spectrometry. Journal of Analytical Atomic Spectrometry. 22(8):973-1006.

Mitchell RJ, Campbell CD, Chapman SJ, Osler GHR, Vanbergen AJ, Ross LC, Cameron CM, Cole L. 2007. The cascading effects of birch on heather moorland: a test for the top-down control of an ecosystem engineer. Journal of Ecology. 95(3):540-554.

Fraser MD, Davies DA, Wright IA, Vale JE, Nute GR, Hallett KG, Richardson RI. 2007. Effect on upland beef production of incorporating winter feeding of red clover silage or summer grazing of Molinia-dominated semi-natural pastures. Grass and Forage Science. 62(3):284-300.

Fraser MD, Davies DA, Vale JE, Hirst WM, Wright IA. 2007. Effects on animal performance and sward composition of mixed and sequential grazing of permanent pasture by cattle and sheep. Livestock Production Science. 110(3):251-266.

Veiberg V, Mysterud A, Langvatn R, Loe LE, Irvine RJ, Bonenfant C, Couweleers F, Stenseth N. 2007. Evidence for a trade-off between early growth and tooth wear in Svalbard reindeer. Journal of Animal Ecology. 76(6):1139-1148.

Dunn SM, McDonnell JJ, Vache KB. 2007. Factors influencing the residence time of catchment waters: A virtual experiment approach. Water Resources Research. 43(6):W06408.

Duncan AJ, Elwert C, Villalba JJ, Yearsley J, Pouloupoulou I, Gordon IJ. 2007. How does pattern of feeding and rate of nutrient delivery influence conditioned food preferences? Oecologia. 153(3):617-624.

McDonnell JJ, Sivapalan M, Vache K, Dunn S, Grant G, Haggerty R, Hinz C, Hooper R, Kirchner J, Roderick M et al.. 2007. Moving beyond heterogeneity and process complexity: A new vision for watershed hydrology. Water Resources Research. 43(7):W07301.

2006

Nuopponen M, Wikberg HI, Birch GM, J A-S, Maunu SL, Vuorinen T, Stewart D. 2006. Characterization of 25 tropical hardwoods with Fourier transform infrared,ultraviolet resonance Raman and 13C cross-polarisation magic-angle spinning NMR spectroscopy. Journal of Applied Polymer Science. 102:810-819. Abstract

van Os H, Andrzejewski S, Bakker E, Barrena I, Bryan GJ, Caromel B, Ghareeb B, Isidore E, De Jong W, van Koert P et al.. 2006. Construction of a 10,000 marker ultradense genetic recombination map of potato: providing a framework for accelerated gene isolation and genomewide physical map. Genetics. 173:1075-1087. Abstract

Bradshaw JE, Hackett CA, Lowe R, McLean K, Stewart HE, Tierney I, Vilaro MDR, Bryan GJ. 2006. Detection of a quantitative trait locus for both foliage and tuber resistance to late blight [Phytophthora infestans (Mont.) de Bary] on chromosome 4 of a dihaploid potato clone (Solanum tubersoum subsp. tuberosum). Theoretical and Applied Genetics. 113:943-951. Abstract

Venkatesh B, Babujee L, Liu H, Hedley PE, Fujikawa T, Birch PRJ, Toth IK, Tsuyumu S. 2006. Erwinia chrysanthemi 3937 PhoQ sensor kinase regulates several virulence determinants. Journal of Bacteriology. 188:3088-3098. Abstract

Nuopponen M, Shepherd T, Birch GM, Verrall SR, Stewart D. 2006. Hemicelluloses and pectins in 25 tropical hardwoods. Cellulose Chemistry and Technology. 40:735-738. Abstract

Hermans C, Hammond JP, White PJ, Verbruggen N. 2006. How do plants respond to nutrient shortage by biomass allocation? Trends in Plant Science. 11:610-617. Abstract

Rostoks N, Ramsay L, MacKenzie K, Cardle L, Bhat PR, Roose ML, Svensson JT, Stein N, Varshney RK, Marshall DF et al.. 2006. Recent history of artificial outcrossing facilitates whole-genome association mapping in elite inbred crop varieties. Proceedings of the National Academy of Sciences, USA. 103:18656-18661. Abstract

Bengough AG, Bransby MF, Hans J, McKenna SJ, Roberts TJ, Valentine TA. 2006. Root responses to soil physical conditions; growth dynamics from field to cell. Journal of Experimental Botany. 57:437-447. Abstract

Wall DH, Adams BJ, Barrett JE, Hopkins DW, Virginia RA. 2006. A synthesis of soil biodiversity and ecosystem functioning in Victoria Land, Antarctica. Soil Biology & Biochemistry. 38:3001-3002. Abstract

Bacon JR, Linge KL, Parrish RR, van Vaeck L. 2006. Atomic spectrometry update - atomic mass spectrometry. Journal of Analytical Atomic Spectrometry. 21(8):785-818.

Iason GR, Villalba JJ. 2006. Behavioral strategies of mammal herbivores against plant secondary metabolites: the avoidance-tolerance continuum. Journal of Chemical Ecology. 32(6):1115-1132.

Michalet R, Brooker RW, Cavieres LA, Zikvidze Z, Lortie CJ, Pugnaire FI, Valiente-Banuet A, Callaway RM. 2006. Do biotic interactions shape both sides of the humped-back model of species richness in plant communities? Ecology Letters. 9(7):767-773.

Gardner DS, Van Bon BWN, Dandrea J, Goddard PJ, May SF, Wilson V, Stephenson T, Symonds ME. 2006. Effect of periconceptual undernutrition and gender on hypothalamic-pituitary-adrenal axis function in young adult sheep. Journal of Endocrinology. 190(2):203-212.

Wright IA, Jones JR, Davies DA, Davidson GR, Vale JE. 2006. The effect of sward surface height on the response to mixed grazing by cattle and sheep. Animal Science. 82:271-276.

Porteous Moore F, Barac B, Borremans B, Oeyen L, Campbell CD, Vangronsveld J, van der Lelie D, Moore ERB. 2006. Endophytic bacterial diversity in poplar trees growing on a btex-contaminated site: the characterisation of isolates with potential to enhance phytoremediation. Systematic and Applied Microbiology. 29(7):539-556.

Vinten AJA, Donnelly S, Ball BC, Brewster J, Crawford CE, Ritchie RM, Parker JP. 2006. A field trial to evaluate the pollution potential to ground and surface waters from woodchip corrals for overwintering livestock outdoors. Soil Use and Management. 22(1):82-94.

Lin H, Bouma J, Pachepsky Y, Western A, Thompson J, van Genuchten TM, Vogel HJ, Lilly A. 2006. Hydropedology: synergistic integration of pedology and hydrology. Water Resources Research. 42(5):W05301.

Dunn SM, Vinogradoff SI, Thornton GJP, Bacon JR, Graham MC, Farmer JG. 2006. Quantifying hydrological budgets and pathways in a small upland catchment using a combined modelling and tracer approach. Hydrological Processes. 20:349-368.

Bacon JR, Farmer JG, Dunn SM, Graham MC, Vinogradoff SI. 2006. Sequential extraction combined with isotope analysis as a tool for the investigation of lead mobilization in soils. Application to organic-rich soils in an upland catchment in Scotland. Environmental Pollution. 141(3):469-481.

Yearsley JM, Villalba J, Kyriazakis I, Speakman JR, Tolkamp BJ, Illius AW, Gordon IJ, Duncan AJ. 2006. A theory of associating food types with their post-ingestive consequences. American Naturalist. 167(5):705-716.

Graham MC, Vinogradoff SI, Chipchase AJ, Dunn SM, Bacon JR, Farmer JG. 2006. Using size fractionation and Pb isotopes to study Pb transport in the waters of an organic-rich upland catchment. Environmental Science and Technology. 40(4):1250-1256.

2005

Armstrong MR, Whisson SC, Pritchard L, Bos JIB, Venter E, Avrova AO, Rehmany AP, B U, Brooks K, Cherevach I et al.. 2005. An ancestral oomycete locus contains late blight avirulence gene Avr3a, encoding a protein that is recognised in the host cytoplasm. Proceedings of the National Academy of Sciences, USA. 102:7766-7771. Abstract

Hancock RD, Viola R. 2005. Biosynthesis and catabolism of L-ascorbic acid in plants. Critical Reviews in Plant Sciences. 24:167-188. Abstract

Corbett M, Virtue S, Bell K, Birch PRJ, Burr T, Hyman L, Lilley K, Poock S, Toth IK, Salmond G. 2005. Identification of a new quorum-sensing-controlled virulence factor in Erwinia carotovora subsp. atroseptica secreted via the type II targeting pathway. Molecular Plant-Microbe Interactions. 18:334-342. Abstract

Hancock RD, Viola R. 2005. Improving the nutritional value of crops through enhancement of L-ascorbic acid (vitamin C) content: rationale and biotechnological opportunities. Journal of Agricultural and Food Chemistry. 53:5248-5257. Abstract

Jing RC, Knox MR, Lee JM, Vershinin AV, Ambrose M, Ellis THN, Flavell AJ. 2005. Insertional polymorphism and antiquity of PDR1 retrotransposon insertions in Pisum species. Genetics. 171:741-752. Abstract

Davies HV, Shepherd LVT, Burrell MM, Carrari F, Urbanczyk-Wochniak E, Leisse A, Hancock RD, Taylor MA, Viola R, Ross HA et al.. 2005. Modulation of fructokinase activity of potato (Solanum tuberosum) results in substantial shifts in tuber metabolism. Plant and Cell Physiology. 46:1103-1115. Abstract

Moln A, Csorba T, Lakatos L, V, Lacomme C, Burgy J. 2005. Plant virus-derived small interfering RNAs originate predominantly from highly structured single-stranded viral RNAs. Journal of Virology. 79:7812-7818. Abstract

Humphris SN, Bengough AG, Griffiths BS, Killham K, Rodger S, Stubbs V, Valentine TA, Young IM. 2005. Root cap influences root colonisation by Pseudomonas fluorescens SBW25 on maize. FEMS Microbiology Ecology. 54:123-130. Abstract

Forbes GA, Chac MG, Kirk HG, Huarte MA, Van Damme M, Distel S, Mackay GR, Stewart HE, Lowe R, Duncan JM et al.. 2005. Stability of resistance to Phytophthora infestans in potato: an international evaluation. Plant Pathology. 54:364-372. Abstract